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Report for CCDS22885.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22885.1 Public Mus musculus 9 Shfl 23 108 98 CCDS HistoryNCBI Gene:319278Re-query CCDS DB by CCDS ID:22885.1Re-query CCDS DB by GeneID:319278See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22885.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043911.7 ENSMUSP00000045384.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043911.7Link to Ensembl Protein Viewer:ENSMUSP00000045384.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000043911Re-query CCDS DB by Protein ID:ENSMUSP00000045384
Original member Current member NCBI NM_175687.2 NP_783618.1 Accepted alive Link to Nucleotide Sequence:NM_175687.2Link to Protein Sequence:NP_783618.1Re-query CCDS DB by Nucleotide ID:NM_175687Re-query CCDS DB by Protein ID:NP_783618Link to BLAST:NP_783618.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_783618.1 290 Q8CAK3-1 290 100% 0 0

Chromosomal Locations for CCDS 22885.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 20868916 20868936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20869330 20869453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20869604 20869653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20871197 20871235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20871376 20871525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20872868 20872971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20873110 20873264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20873542 20873771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (873 nt):
ATGGCTCAGGATGGCGTGGAGTTGGAGAAGAGCGTCAGGCGCCTCCGGGAGAAGTTTCATGGGAAAGTGT
CCCCCAAGAAGGCAGGGGCTCTTATGAGGAAGTTTGGCAGCGACCACACCGGAGTTGGGCGCTCTATCGT
GTATGGTGTCAAGCAGAAAGACGGACAGGAGCTGAGCAACGACCTGGACGCTCAGGACCCACCAGAGGAC
ATGAAGCAAGACCAAGATATCCAGGCAGTAGCCACCTCTCTGTTGCCCCTGACGCAAGCCAATCTTCGAA
TGTTCCAAAGAGCCCAAGATGACCTCATCCCTGCCGTGGACCGACAGTTTGCCTGCTCCTCCTGTGACCA
TGTATGGTGGCGCCGTGTACCCCAGAGGAAAGAGGTGTCACGGTGTCGCAAGTGTAGGAAGCGTTACGAA
CCAGTGCCACTTGACAAGATGTGGGGCCTGGCAGAGTTCCACTGCCCAAAGTGTCGCCACAACTTCCGGG
GCTGGGCACAGATGGGGTCCCCATCACCCTGCTACGGGTGCGGCTTCCCTGTGTACCCCACCCGGATCCT
GCCCCCACGCTGGGACCGTGACCTGGACCGTCGCAGCACACACACCCACTCCTGCTCAGCTGCAGATTGC
TACAATCGGAGAGAGCCCCATGTGCCTGGGACCTCCTGCGCCCACCCCAAGAGCCGTAAGCAGAACCACC
TCCCCAAAGTGCTGCACCCGAGCAACCCCCACATCAGCAGCGGCTCCACGGTGGCCACGTGCCTGAGCCA
AGGAGGCCTCGTGGATGACCTGGACCACCTCATCCTGGAGGACCTGAAAGAGGAGGAGGAGGAGGAGGAG
GAGGAAGAGGAGGACGGTGGGCCCCGAGAGTGA

Translation (290 aa):
MAQDGVELEKSVRRLREKFHGKVSPKKAGALMRKFGSDHTGVGRSIVYGVKQKDGQELSNDLDAQDPPED
MKQDQDIQAVATSLLPLTQANLRMFQRAQDDLIPAVDRQFACSSCDHVWWRRVPQRKEVSRCRKCRKRYE
PVPLDKMWGLAEFHCPKCRHNFRGWAQMGSPSPCYGCGFPVYPTRILPPRWDRDLDRRSTHTHSCSAADC
YNRREPHVPGTSCAHPKSRKQNHLPKVLHPSNPHISSGSTVATCLSQGGLVDDLDHLILEDLKEEEEEEE
EEEEDGGPRE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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