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Report for CCDS2260.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2260.1 Public Homo sapiens 2 WIPF1 24 110 108 CCDS HistoryNCBI Gene:7456Re-query CCDS DB by CCDS ID:2260.1Re-query CCDS DB by GeneID:7456See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2260.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359761.7 ENSP00000352802.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359761.7Link to Ensembl Protein Viewer:ENSP00000352802.3Re-query CCDS DB by Nucleotide ID:ENST00000359761Re-query CCDS DB by Protein ID:ENSP00000352802
Original member Current member EBI ENST00000392546.6 ENSP00000376329.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392546.6Link to Ensembl Protein Viewer:ENSP00000376329.2Re-query CCDS DB by Nucleotide ID:ENST00000392546Re-query CCDS DB by Protein ID:ENSP00000376329
Original member Current member EBI ENST00000392547.6 ENSP00000376330.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392547.6Link to Ensembl Protein Viewer:ENSP00000376330.2Re-query CCDS DB by Nucleotide ID:ENST00000392547Re-query CCDS DB by Protein ID:ENSP00000376330
Original member Current member EBI ENST00000436221.2 ENSP00000388454.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000436221.2Link to Ensembl Protein Viewer:ENSP00000388454.2Re-query CCDS DB by Nucleotide ID:ENST00000436221Re-query CCDS DB by Protein ID:ENSP00000388454
Original member Current member EBI ENST00000679041.1 ENSP00000503603.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000679041.1Link to Ensembl Protein Viewer:ENSP00000503603.1Re-query CCDS DB by Nucleotide ID:ENST00000679041Re-query CCDS DB by Protein ID:ENSP00000503603
Original member Current member EBI ENST00000698668.1 ENSP00000513869.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698668.1Link to Ensembl Protein Viewer:ENSP00000513869.1Re-query CCDS DB by Nucleotide ID:ENST00000698668Re-query CCDS DB by Protein ID:ENSP00000513869
Original member Current member EBI ENST00000698701.1 ENSP00000513882.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698701.1Link to Ensembl Protein Viewer:ENSP00000513882.1Re-query CCDS DB by Nucleotide ID:ENST00000698701Re-query CCDS DB by Protein ID:ENSP00000513882
Original member Current member NCBI NM_001077269.1 NP_001070737.1 Accepted alive Link to Nucleotide Sequence:NM_001077269.1Link to Protein Sequence:NP_001070737.1Re-query CCDS DB by Nucleotide ID:NM_001077269Re-query CCDS DB by Protein ID:NP_001070737Link to BLAST:NP_001070737.1
Original member Current member NCBI NM_001375832.1 NP_001362761.1 Accepted alive Link to Nucleotide Sequence:NM_001375832.1Link to Protein Sequence:NP_001362761.1Re-query CCDS DB by Nucleotide ID:NM_001375832Re-query CCDS DB by Protein ID:NP_001362761Link to BLAST:NP_001362761.1
Original member Current member NCBI NM_001375833.1 NP_001362762.1 Accepted alive Link to Nucleotide Sequence:NM_001375833.1Link to Protein Sequence:NP_001362762.1Re-query CCDS DB by Nucleotide ID:NM_001375833Re-query CCDS DB by Protein ID:NP_001362762Link to BLAST:NP_001362762.1
Original member Current member NCBI NM_001375834.1 NP_001362763.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001375834.1Link to Protein Sequence:NP_001362763.1Re-query CCDS DB by Nucleotide ID:NM_001375834Re-query CCDS DB by Protein ID:NP_001362763Link to BLAST:NP_001362763.1
Original member Current member NCBI NM_003387.5 NP_003378.3 Accepted alive Link to Nucleotide Sequence:NM_003387.5Link to Protein Sequence:NP_003378.3Re-query CCDS DB by Nucleotide ID:NM_003387Re-query CCDS DB by Protein ID:NP_003378Link to BLAST:NP_003378.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070737.1 503 O43516-1 503 100% 0 0
NP_001362761.1 503 O43516-1 503 100% 0 0
NP_001362762.1 503 O43516-1 503 100% 0 0
NP_001362763.1 503 O43516-1 503 100% 0 0
NP_003378.3 503 O43516-1 503 100% 0 0

Chromosomal Locations for CCDS 2260.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 174562547 174562602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 174567070 174567183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 174567861 174568073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 174571676 174572446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 174575204 174575380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 174581310 174581439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 174585523 174585573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1512 nt):
ATGCCTGTCCCTCCCCCTCCAGCACCCCCGCCGCCCCCGACGTTTGCACTGGCCAATACAGAGAAGCCTA
CCTTGAATAAGACAGAGCAGGCTGGGAGAAATGCTCTCCTTTCTGATATCAGCAAAGGGAAGAAACTAAA
GAAGACGGTCACCAATGACAGAAGTGCACCAATACTGGACAAACCTAAAGGAGCTGGTGCTGGAGGCGGT
GGTGGTGGCTTTGGTGGAGGCGGCGGATTTGGCGGAGGAGGTGGTGGCGGAGGCGGTGGAAGTTTTGGAG
GGGGCGGACCTCCAGGTCTGGGAGGATTGTTCCAGGCTGGAATGCCGAAGCTGAGATCCACGGCCAACAG
GGATAATGATTCTGGAGGAAGCCGACCACCATTGTTGCCACCGGGAGGAAGATCCACATCTGCGAAACCC
TTTTCACCCCCAAGTGGCCCAGGGAGGTTTCCTGTGCCTTCTCCAGGCCACAGAAGTGGTCCCCCAGAGC
CTCAGAGGAACCGAATGCCGCCCCCAAGGCCCGACGTGGGCTCAAAGCCTGATAGCATTCCTCCTCCAGT
ACCTAGTACTCCAAGACCCATTCAATCAAGTCCGCACAACCGGGGGTCCCCACCAGTGCCCGGAGGCCCC
AGGCAGCCCAGCCCCGGGCCCACTCCTCCCCCTTTCCCTGGAAACCGCGGCACTGCTTTGGGAGGAGGCT
CAATACGTCAGTCCCCCTTGAGCTCCTCCTCGCCCTTCTCCAACCGGCCTCCCCTGCCGCCTACCCCCAG
CAGGGCCTTGGATGACAAACCCCCTCCACCACCTCCTCCAGTGGGCAACAGGCCCTCCATCCACAGGGAA
GCGGTTCCCCCTCCTCCTCCTCAGAACAACAAGCCTCCAGTGCCTTCCACTCCGCGGCCTTCGGCCTCCT
CACAGGCCCCACCTCCGCCGCCACCTCCCAGCAGGCCCGGGCCGCCTCCTCTGCCTCCAAGTTCCAGCGG
CAATGACGAAACCCCAAGACTCCCACAGCGGAATCTGTCCCTCAGTTCGTCCACGCCCCCGTTACCTTCG
CCAGGACGTTCAGGTCCTCTTCCTCCCCCGCCCAGTGAGAGACCCCCACCTCCAGTGAGGGACCCGCCAG
GCCGATCAGGCCCCCTCCCACCACCTCCTCCAGTAAGCAGAAACGGCAGCACATCTCGGGCCCTGCCTGC
TACCCCTCAGTTGCCATCCAGGAGTGGAGTAGACAGTCCCAGGAGTGGACCCAGGCCTCCCCTTCCTCCT
GATAGGCCCAGTGCTGGGGCACCTCCCCCACCTCCACCATCAACATCTATTAGAAATGGCTTCCAAGACT
CTCCATGTGAAGATGAGTGGGAAAGCAGATTCTACTTCCATCCGATTTCCGATTTGCCACCTCCAGAGCC
ATATGTACAAACGACCAAAAGTTATCCCAGCAAACTGGCAAGAAACGAAAGCCGGAGTGGATCCAACCGA
AGAGAAAGGGGTGCTCCACCACTCCCTCCCATCCCGAGGTGA

Translation (503 aa):
MPVPPPPAPPPPPTFALANTEKPTLNKTEQAGRNALLSDISKGKKLKKTVTNDRSAPILDKPKGAGAGGG
GGGFGGGGGFGGGGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDNDSGGSRPPLLPPGGRSTSAKP
FSPPSGPGRFPVPSPGHRSGPPEPQRNRMPPPRPDVGSKPDSIPPPVPSTPRPIQSSPHNRGSPPVPGGP
RQPSPGPTPPPFPGNRGTALGGGSIRQSPLSSSSPFSNRPPLPPTPSRALDDKPPPPPPPVGNRPSIHRE
AVPPPPPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPS
PGRSGPLPPPPSERPPPPVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQLPSRSGVDSPRSGPRPPLPP
DRPSAGAPPPPPPSTSIRNGFQDSPCEDEWESRFYFHPISDLPPPEPYVQTTKSYPSKLARNESRSGSNR
RERGAPPLPPIPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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