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Report for CCDS22357.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22357.1 Public Mus musculus 8 Tm6sf2 23 108 98 CCDS HistoryNCBI Gene:107770Re-query CCDS DB by CCDS ID:22357.1Re-query CCDS DB by GeneID:107770See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22357.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049197.5 ENSMUSP00000046114.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049197.5Link to Ensembl Protein Viewer:ENSMUSP00000046114.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000049197Re-query CCDS DB by Protein ID:ENSMUSP00000046114
Original member Current member NCBI NM_181540.4 NP_853518.1 Accepted alive Link to Nucleotide Sequence:NM_181540.4Link to Protein Sequence:NP_853518.1Re-query CCDS DB by Nucleotide ID:NM_181540Re-query CCDS DB by Protein ID:NP_853518Link to BLAST:NP_853518.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_853518.1 376 Q8R1J1-2 376 99.4681% 0 2

Chromosomal Locations for CCDS 22357.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 70072995 70073089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70074278 70074381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70075332 70075429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70075500 70075603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70076001 70076083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70077390 70077514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70077887 70077982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70078310 70078402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70078805 70078924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70079616 70079828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1131 nt):
ATGGACATCCCGCCCCTAGCCGGCAGGACTGTGGCAATGTCATTCTGCGCCCTGCCAGTGTCCTACCTAC
TCAATCAAGTTTCGGCGTTCTCACAGCCCCTGTTTGTGGTGCTGACGAGTGCTCTGATACTGGGTCTGCT
CTTCCTGGCAGTCTATAGCCTATCTCATGGGGAGATCACCTACGACCCTCTCTATGCTGTCTTTGTGATC
TTCTCCTTCACCTCGGTGGTGGACCTTGTCATTGCACTCCAAGAAGATGGCTACATGATGGGCTTCATGG
ATTTCTACACCAAGGAGGGTGAGCCCTACCTACGCACAGCACATGGCATCTTCATCTGCTACTGGGATGG
TACTGTGCACTACCTGCTCTATCTGACAATGGCTGGTGCCATCCGCAAAAGGAAAAGGTACCGGAACCTT
GGGCTCTACTGGCTGGGATCCTTCGCCATGAGCATCCTGGTGTTTCTCCCGGGAAACATCCTTGGTAAAT
ACAGTTCAGAGATGAGGCCTACCTTCTTCCTCGCCATCCTGTACATGCTGGTCCCATGCTGGGCCGGTGT
GAGGATCTTCAACCAGTCCCGGGCACCAACCTCCTATACCCCTGACATGGAAGAACAGAAGAAAAGTCTC
TTCCAGCGTCCGGCTGACCTGGCACTCATAGTATACCTCATCTTTGCAGCGCTCTTCACTGTCTTCCGGG
GTCTGGTGGTACTTGACTGCCCCACAGATGCCTGCTTCATCTATATTTACCAATATGAGCCATACCTTCG
GGACCCTGTGGCCTACCCAAAGTTGCAGATGCTGATGTATTTGTTCTATGCTCTACCATTCTACTGCCTG
GCTGCCTACGCCCTTGCCTTCCCTGGCTGCTCCTGGCTGCCGGACTGGGCCTTGGTATTTGCTGGAGCCA
TTGGCCAGGCGCAGTTCTCACACATGGGTGCCTCCATGCACATGCGCACACCCTTCACCTACCGCGTGCC
AGAGGACACCTGGGCTACCTTCTTTCTGAGCAACCTGCTATTGGCACTGGGTCCCCACCTGCTGGCTTTC
CGCTGCCTGTGGCGGCCCGCCTTCTTCTTGCATGCAGCGCTGCCATCTTCGCCACAGGACCAAGACAAGA
AGCAGCAGTGA

Translation (376 aa):
MDIPPLAGRTVAMSFCALPVSYLLNQVSAFSQPLFVVLTSALILGLLFLAVYSLSHGEITYDPLYAVFVI
FSFTSVVDLVIALQEDGYMMGFMDFYTKEGEPYLRTAHGIFICYWDGTVHYLLYLTMAGAIRKRKRYRNL
GLYWLGSFAMSILVFLPGNILGKYSSEMRPTFFLAILYMLVPCWAGVRIFNQSRAPTSYTPDMEEQKKSL
FQRPADLALIVYLIFAALFTVFRGLVVLDCPTDACFIYIYQYEPYLRDPVAYPKLQMLMYLFYALPFYCL
AAYALAFPGCSWLPDWALVFAGAIGQAQFSHMGASMHMRTPFTYRVPEDTWATFFLSNLLLALGPHLLAF
RCLWRPAFFLHAALPSSPQDQDKKQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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