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Report for CCDS21794.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21794.1 Public Mus musculus 7 Crym 23 108 98 CCDS HistoryNCBI Gene:12971Re-query CCDS DB by CCDS ID:21794.1Re-query CCDS DB by GeneID:12971See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21794.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033198.5 ENSMUSP00000033198.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033198.5Link to Ensembl Protein Viewer:ENSMUSP00000033198.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000033198Re-query CCDS DB by Protein ID:ENSMUSP00000033198
Original member Current member NCBI NM_016669.2 NP_057878.1 Accepted alive Link to Nucleotide Sequence:NM_016669.2Link to Protein Sequence:NP_057878.1Re-query CCDS DB by Nucleotide ID:NM_016669Re-query CCDS DB by Protein ID:NP_057878Link to BLAST:NP_057878.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057878.1 313 O54983 313 100% 0 0

Chromosomal Locations for CCDS 21794.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 120186634 120186698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120189726 120189810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120190452 120190573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120195325 120195508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120197650 120197751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120199248 120199310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120201077 120201227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120201755 120201924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGAAGCGGGCGCCAGCGTTCCTGAGCGCAGAGGAGGTGCAGGATCACCTTCGCAGCTCCAGCCTTCTCA
TCCCACCCCTGGAGGCCGCACTGGCCAACTTCTCCAAAGGTCCCGACGGAGGGGTCATGCAGCCAGTGCG
CACCGTGGTGCCTGTAGCCAAGCACCGAGGCTTCCTGGGAGTCATGCCTGCCTACAGTGCTGCTGAGGAT
GCGCTCACCACCAAGTTAGTCACCTTCTATGAGGGCCACAGCAACACAGCGGTCCCCTCCCATCAGGCAT
CGGTGCTTCTCTTTGATCCCAGCAATGGCTCCCTGCTGGCGGTCATGGATGGAAATGTCATAACTGCAAA
GAGAACAGCAGCGGTGTCTGCCATTGCCACAAAGCTGTTGAAGCCCCCAGGCAGTGATGTGCTGTGCATC
CTTGGAGCGGGGGTCCAGGCGTACAGTCACTATGAGATCTTCACAGAGCAGTTCTCCTTCAAGGAGGTGA
GAATGTGGAACCGCACCAGGGAAAATGCTGAGAAGTTTGCAAGCACAGTGCAAGGAGATGTTCGGGTCTG
TTCATCAGTGCAGGAGGCTGTGACAGGTGCTGATGTCATCATCACAGTCACCATGGCAACAGAGCCCATT
TTATTTGGTGAATGGGTAAAGCCGGGGGCTCACATCAATGCTGTTGGAGCCAGCAGGCCTGACTGGCGAG
AACTGGATGACGAGCTCATGAGGCAAGCGGTGCTGTATGTGGACTCCCGGGAGGCTGCCCTGAAGGAGTC
AGGAGACGTTCTGTTGTCAGGGGCTGACATCTTTGCTGAGCTTGGAGAAGTGATTTCAGGAGCGAAGCCT
GCACACTGTGAGAAGACCACAGTGTTCAAATCTTTGGGGATGGCAGTGGAAGACCTGGTTGCAGCCAAAT
TAGTATATGATTCTTGGTCATCTGGCAAGTGA

Translation (313 aa):
MKRAPAFLSAEEVQDHLRSSSLLIPPLEAALANFSKGPDGGVMQPVRTVVPVAKHRGFLGVMPAYSAAED
ALTTKLVTFYEGHSNTAVPSHQASVLLFDPSNGSLLAVMDGNVITAKRTAAVSAIATKLLKPPGSDVLCI
LGAGVQAYSHYEIFTEQFSFKEVRMWNRTRENAEKFASTVQGDVRVCSSVQEAVTGADVIITVTMATEPI
LFGEWVKPGAHINAVGASRPDWRELDDELMRQAVLYVDSREAALKESGDVLLSGADIFAELGEVISGAKP
AHCEKTTVFKSLGMAVEDLVAAKLVYDSWSSGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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