NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS21688.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21688.1 Public Mus musculus 7 Nlrp14 23 108 98 CCDS HistoryNCBI Gene:76858Re-query CCDS DB by CCDS ID:21688.1Re-query CCDS DB by GeneID:76858See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21688.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084763.4 ENSMUSP00000081819.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084763.4Link to Ensembl Protein Viewer:ENSMUSP00000081819.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000084763Re-query CCDS DB by Protein ID:ENSMUSP00000081819
Original member Current member NCBI NM_001002894.2 NP_001002894.2 Accepted alive Link to Nucleotide Sequence:NM_001002894.2Link to Protein Sequence:NP_001002894.2Re-query CCDS DB by Nucleotide ID:NM_001002894Re-query CCDS DB by Protein ID:NP_001002894Link to BLAST:NP_001002894.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001002894.2 993 Q6B966 993 100% 0 0

Chromosomal Locations for CCDS 21688.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 107181173 107181245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 107181671 107183252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 107184728 107184901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 107186548 107186712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 107190023 107190193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 107191059 107191229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 107192446 107192616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 107196042 107196212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 107197147 107197317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 107197777 107197909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2982 nt):
ATGAAGACTGAGGATGATGAGATGGAATACGAAGCTTCTAAAGAGGAAACCGTGAGTGAGGACAAAGACT
TTGATGATGGAATAGACTACAGAACTGTAATAAAGGAAAACATTTTTACTATGTGGTATAAGACCTCTTT
GCATGGAGAATTTGCAACTTTAAATTGTGTAATTACACCTAAAGACCAAAATCTGCTGCAGCATATATTT
GATGAGGATATCCAAACTTCCGAGGCTCCACAAACGGTAGTCCTTCAAGGAGCTGCTGGAATTGGGAAGA
CAACATTGTTGAAAAAGGCAGTCTTAGAATGGGCAGATGGCAATCTCTATCAGCAGTTTACCCATGTATT
TTATCTCAATGGGAAAGAGATTAGCCAAGTAAAGGAGAAAAGCTTTGCTCAGTTAATATCAAAGCACTGG
CCTAGCAGCGAGGGCCCCATTGAACAGGTCCTGTCTAAACCCAGCAGTCTCCTCTTTATAATCGATAGTT
TTGATGAACTGGATTTCTCCTTTGAAGAGCCACAGTTTGCACTGTGTAAAGACTGGACCCAGATCTCCCC
AGTGTCTTTTCTCATTAGTAGTTTGCTGAGGAAAGTGATGCTTCCTGAGTCCTACTTATTAGTAGCGACA
AGATCCACAGCTTGGAAGCGACTAGTGCCTTTATTGCAAAAACCTCAACGTGTAAAGCTGTCAGGGCTGT
CTAAGAATGCAAGGATGGACTATATTCACCATTTGTTGAAAGATAAGGCATGGGCTACGAGTGCAATTTA
TTCACTAAGAATGAATTGGAGGCTTTTCCACATGTGCCACGTGTGCCACATGTGCCAGATGATCTGTGCT
GTTCTCAAGGGACAAGTGGAGAAAGGTGGCCGTGTTGAAGAGACCTGCAAAACCAGCACGGCTCTGTTCA
CATACTATATCTGCAGCTTATTTCCACGCATACCTGTGGGCTGTGTTACTCTGCCCAATGAAACCCTGTT
GAGGAGCCTGTGCAAGGCTGCTGTTGAAGGCATCTGGACAATGAAGCATGTGCTTTACCAGCAAAATCTC
CGAAAGCATGAATTAACCAGAGAGGACATTTTGCTTTTCCTGGATGCAAAGGTTCTTCAGCAAGACACTG
AGTATGAAAACTGCTACATGTTCACTCACCTCCATGTTCAGGAGTTTTTTGCAGCTCTTTTTTACTTGCT
GAGAGAGAATTTAGAAGAACAAGACTATCCCTCTGAACCTTTTGAAAACTTGTATCTGTTGCTTGAAAGC
AACCACATTCATGACCCTCATTTGGAACAGATGAAATGCTTTTTGTTTGGTCTACTAAATAAAGACAGAG
TACGACAACTGGAGGAAACTTTCAACCTTACAATATCCATGGAGGTAAGAGAAGAGTTACTTGCATGTCT
GGAAGGATTAGAAAAGGATGACTCTTCTCTATCACAGCTGAGATTTCAAGACTTGCTCCACTGTATATAT
GAGACTCAAGATCAAGAATTCATCACTCAGGCACTGATGTATTTCCAAAAGATTATCGTGAGGGTTGACG
AAGAACCCCAGTTGCGTATATATTCATTCTGTCTTAAGCACTGCCACACTCTAAAGACTATGAGACTGAC
AGCAAGGGCAGACTTGAAAAATATGTTGGACACAGCTGAAATGTGCCTTGAGGGTGCTGCTGTTCAAGTC
ATTCACTACTGGCAAGATCTGTTTTCTGTGCTTCATACAAATGAGTCCCTGATAGAAATGGATCTGTATG
AAAGCAGACTTGATGAATCATTGATGAAAATTTTGAATGAAGAATTAAGTCACCCAAAGTGTAAACTACA
AAAACTAATATTCAGAGCTGTCGATTTCCTGAATGGCTGTCAGGATTTTACTTTCTTGGCTTCCAATAAG
AAGGTGACACATCTTGACCTGAAAGAAACTGATTTAGGAGTCAATGGACTAAAGACCTTATGTGAAGCCT
TGAAATGCAAAGGATGTAAATTACGGGTGCTTAGGTTGGCATCCTGCGACCTGAATGTAGCCCGTTGTCA
AAAGTTATCCAATGCTCTCCAAACCAATAGGAGCCTGGTATTTCTGAATCTGTCCCTCAACAATCTATCA
AATGATGGAGTAAAGTCGTTGTGTGAGGTCTTAGAAAATCCAAACTCTTCTCTAGAGAGACTGGCCTTAG
CAAGCTGTGGCCTCACAAAAGCTGGTTGTAAAGTTCTTTCCTCGGCTCTCACCAAAAGCAAGAGGCTGAC
ACATTTATGCTTGTCAGACAACGTCTTAGAAGATGAAGGGATAAAGCTGCTCAGCCATACCTTGAAGCAT
CCACAGTGTACTCTGCAGAGCCTTGTGCTTAGGTCTTGCAGTTTCACTCCGATTGGCAGTGAGCATCTCT
CCACCGCTCTCCTGCACAACAGGAGCTTGGTACATCTGGACCTGGGACAAAACAAGCTGGCGGATAATGG
AGTGAAGCTTCTGTGTCACTCCCTCCAGCAGCCACACTGCAATCTTCAGGAGCTGGAGTTGATGAGCTGT
GTTCTCACGAGTAAGGCTTGTGGGGATCTGGCTTCTGTTCTTGTGAACAACTCAAACTTGTGGAGCCTAG
ACCTTGGGCACAATATCTTGGATGATGCTGGTCTGAATATTCTGTGTGATGCTTTAAGAAATCCCAACTG
CCACGTTCAGAGGCTAGGATTGGAAAACTGTGGTTTGACCCCTGGTTGCTGTCAGGATCTCTTAGGTATC
TTATCTAACAACAAAAGTGTGATACAAATGAACTTAATGAAGAATGCCCTTGATCATGAATCAATTAAGA
ATCTATGTAAAGTCTTGAGATCTCCAACATGCAAAATGGAATTTCTAGCGTTAGACAAAAAGGAAATATT
GAAGAAGAAAATCAAGAAGTTTCTGGTCGATGTAAGAATTAATAATCCACATTTGGTCATTGGGCCAGAG
TGTCCTAATACAGAAAGTGGGTGCTGGTGGAATTATTTCTGA

Translation (993 aa):
MKTEDDEMEYEASKEETVSEDKDFDDGIDYRTVIKENIFTMWYKTSLHGEFATLNCVITPKDQNLLQHIF
DEDIQTSEAPQTVVLQGAAGIGKTTLLKKAVLEWADGNLYQQFTHVFYLNGKEISQVKEKSFAQLISKHW
PSSEGPIEQVLSKPSSLLFIIDSFDELDFSFEEPQFALCKDWTQISPVSFLISSLLRKVMLPESYLLVAT
RSTAWKRLVPLLQKPQRVKLSGLSKNARMDYIHHLLKDKAWATSAIYSLRMNWRLFHMCHVCHMCQMICA
VLKGQVEKGGRVEETCKTSTALFTYYICSLFPRIPVGCVTLPNETLLRSLCKAAVEGIWTMKHVLYQQNL
RKHELTREDILLFLDAKVLQQDTEYENCYMFTHLHVQEFFAALFYLLRENLEEQDYPSEPFENLYLLLES
NHIHDPHLEQMKCFLFGLLNKDRVRQLEETFNLTISMEVREELLACLEGLEKDDSSLSQLRFQDLLHCIY
ETQDQEFITQALMYFQKIIVRVDEEPQLRIYSFCLKHCHTLKTMRLTARADLKNMLDTAEMCLEGAAVQV
IHYWQDLFSVLHTNESLIEMDLYESRLDESLMKILNEELSHPKCKLQKLIFRAVDFLNGCQDFTFLASNK
KVTHLDLKETDLGVNGLKTLCEALKCKGCKLRVLRLASCDLNVARCQKLSNALQTNRSLVFLNLSLNNLS
NDGVKSLCEVLENPNSSLERLALASCGLTKAGCKVLSSALTKSKRLTHLCLSDNVLEDEGIKLLSHTLKH
PQCTLQSLVLRSCSFTPIGSEHLSTALLHNRSLVHLDLGQNKLADNGVKLLCHSLQQPHCNLQELELMSC
VLTSKACGDLASVLVNNSNLWSLDLGHNILDDAGLNILCDALRNPNCHVQRLGLENCGLTPGCCQDLLGI
LSNNKSVIQMNLMKNALDHESIKNLCKVLRSPTCKMEFLALDKKEILKKKIKKFLVDVRINNPHLVIGPE
CPNTESGCWWNYF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH