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Report for CCDS21331.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21331.1 Public Mus musculus 7 Klf13 23 108 98 CCDS HistoryNCBI Gene:50794Re-query CCDS DB by CCDS ID:21331.1Re-query CCDS DB by GeneID:50794See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21331.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063694.9 ENSMUSP00000067680.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063694.9Link to Ensembl Protein Viewer:ENSMUSP00000067680.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000063694Re-query CCDS DB by Protein ID:ENSMUSP00000067680
Original member Current member NCBI NM_021366.3 NP_067341.2 Accepted alive Link to Nucleotide Sequence:NM_021366.3Link to Protein Sequence:NP_067341.2Re-query CCDS DB by Nucleotide ID:NM_021366Re-query CCDS DB by Protein ID:NP_067341Link to BLAST:NP_067341.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067341.2 289 Q9JJZ6 289 100% 0 0

Chromosomal Locations for CCDS 21331.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 63891508 63891797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 63937967 63938546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (870 nt):
ATGGCAGCCGCCGCCTATGTGGACCACTTTGCCGCCGAGTGCCTCGTGTCCATGTCCAGCCGCGCAGTCG
TGCACGAGCCGCGGGAAGGACCTGAACCCCGGCCCGAGGGCGCGGCCGCCGCCGCCCCCACACTGCCCCG
CGTTGACGAGCGCCGCGACGGCAAGGACAGCGCCTCGCTTTTCGTGGTGGCTCGGATCCTAGCGGACCTC
AACCAGCAGGCGCCGGCGCCCGCCCCCGCGGAACGCAGAGAAGGGGCCGCTGCGCGCAAGGCGAGGACCC
CCTGCCGCCTGCCGCCTGCGCCCCCTGCGCCGCCACCCGGCCCAGAGCCCGCCTCCCCGGGACAAGCAGG
CGCGCCGGCCGCGCCCCCCAGCCCCGCGTGGAGCGAGCCGGAGGCGGCATTGGAGCAGGAGCCCGGCCCC
GCGGGGAGCGGCGAGCCTGGCCTCAGACAAAGGGGTCGGCGAGGCCGGAGCCGCGCGGACCTCGAGTCCC
CGCAGAGGAAGCACAAGTGCCACTACGCGGGCTGCGAGAAAGTTTACGGGAAATCTTCGCACCTCAAGGC
GCACCTGAGAACTCACACAGGTGAGAGGCCTTTCGCCTGCAGCTGGCAGGAGTGCAACAAGAAGTTCGCA
CGCTCGGACGAGCTGGCACGGCACTATCGCACGCACACGGGCGAGAAGAAGTTCAGCTGCCCCATCTGTG
AGAAGCGCTTCATGCGGAGCGACCACCTGACGAAGCACGCACGCCGCCACGCCAACTTCCACCCAGGCAT
GCTGCAGCGGCGCGGCGGGGGCTCGAGGACCGGCTCGCTCAGCGACTACAGCCGCTCCGATGCCAGCAGC
CCCACCATCAGCCCGGCCAGCTCACCCTGA

Translation (289 aa):
MAAAAYVDHFAAECLVSMSSRAVVHEPREGPEPRPEGAAAAAPTLPRVDERRDGKDSASLFVVARILADL
NQQAPAPAPAERREGAAARKARTPCRLPPAPPAPPPGPEPASPGQAGAPAAPPSPAWSEPEAALEQEPGP
AGSGEPGLRQRGRRGRSRADLESPQRKHKCHYAGCEKVYGKSSHLKAHLRTHTGERPFACSWQECNKKFA
RSDELARHYRTHTGEKKFSCPICEKRFMRSDHLTKHARRHANFHPGMLQRRGGGSRTGSLSDYSRSDASS
PTISPASSP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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