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Report for CCDS20876.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20876.1 Public Mus musculus 7 Psg22 23 108 98 CCDS HistoryNCBI Gene:243862Re-query CCDS DB by CCDS ID:20876.1Re-query CCDS DB by GeneID:243862See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 20876.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051973.8 ENSMUSP00000050633.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051973.8Link to Ensembl Protein Viewer:ENSMUSP00000050633.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000051973Re-query CCDS DB by Protein ID:ENSMUSP00000050633
Original member Current member EBI ENSMUST00000208221.1 ENSMUSP00000146795.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000208221.1Link to Ensembl Protein Viewer:ENSMUSP00000146795.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000208221Re-query CCDS DB by Protein ID:ENSMUSP00000146795
Original member NCBI NM_001004152.2 NP_001004152.1 Updated not alive Link to Nucleotide Sequence:NM_001004152.2Link to Protein Sequence:NP_001004152.1Re-query CCDS DB by Nucleotide ID:NM_001004152Re-query CCDS DB by Protein ID:NP_001004152
Current member NCBI NM_001004152.3 NP_001004152.1 Accepted alive Link to Nucleotide Sequence:NM_001004152.3Link to Protein Sequence:NP_001004152.1Re-query CCDS DB by Nucleotide ID:NM_001004152Re-query CCDS DB by Protein ID:NP_001004152Link to BLAST:NP_001004152.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004152.1 475 Q810J1 475 100% 0 0

Chromosomal Locations for CCDS 20876.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 18718277 18718340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 18719446 18719805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 18722735 18723094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 18724287 18724646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 18726709 18726992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGGAGGTATCCTCTGAGCTTCTCAGCAATGGGTGGACCTCCTGGCAAAGGGTTCTGCTCACAGCCTCCC
TC
TTAACCTGCTGGCTCTTGCCCATCACTGCCGGAGTCACCATCGAATCCGTACCACCCAAATTGGTTGA
A
GGAGAAAATGTTCTTCTACGAGTGGACAATCTGCCAGAGAATCTTCGAGTCTTTGTCTGGTATAGAGGG
GTG
ACAGACATGAGCCTCGGAATTGCATTGTATTCACTTGACTATAGCACAAGTGTGACAGGACCTAAGC
AC
AGTGGTAGAGAGACATTGTACAGAAACGGGTCCCTGTGGATCCAAAATGTCACCCGGGAAGACACAGG
A
TATTACACTCTTCAAACCATAAGTAAAAATGGAAAAGTGGTATCAAATACATCCATATTCCTTCAGGTG
AAC
TCCTCTCTTTTCATCTGTGGGCGCCCTTCTCCACCTGCACTCCTCACTATTGAATCAGTGCCAGCCA
GC
GTTGCTGAAGGGGGAAGCGTTCTTCTCCTTGTCCACAGTCTTCCAGATAATCTTCAATCGCTTCTCTG
G
TACAAAGGGTTGACTGTGTTTAACAAGGTTGAGATTGCTCGGCACAGAACAGTCAAGAATTCAAGTGAA
ATG
GGCCCTGCCTACAGCGGTAGAGAGATAGTGTACAGCAATGGATCTCTGCTGCTCCAGAATGTCACCT
GG
GAAGACACAGGATTCTACACCCTACAAATTGTGAACAGATATTGGAAAATGGAATTAGCACACATTTA
C
CTTCAGGTGGACACCTCCCTTTCCTCGTGCTGTGACGATTTCAACTCTGTCCAACTGAGGATCAATCCA
GTG
CCACCGCATGCTGCTGAAGGGGAAAGGGTTCTTCTCCAGGTCCATAATCTGCCAGAAGATGTGCAAA
CC
TTTTTGTGGTACAAAGGCGTCTATAGCACTCAGAGCTTTAAAATTACAGAGTATAGCATAGTGACAGA
G
TCTCTCATCAATGGCTATGCACACAGTGGAAGAGAGATATTGTTCATCAATGGATCCCTGCTGCTCCAG
GAT
GTCACTGAGAAAGACTCTGGCTTCTACACACTAGTAACAATCGACAGCAATGTGAAAGTTGAAACAG
CC
CATGTGCAAGTCAATGTGAACAAGCTTGTGACACAGCCTGTCATGAGAGTCACGGACAGCACAGTTCG
A
ATACAGGGCTCAGTGGTCTTCACTTGCTTCTCAGACAACACTGGGGTCTCCATCCGTTGGCTCTTCAAC
AAT
CAGAATCTGCAGCTCACAGAGAGGATGACCCTGTCCCCATCAAAGTGCCAACTCAGGATACATACTG
TG
AGGAAGGAGGATGCTGGAGAGTATCAATGTGAGGCCTTCAACCCAGTCAGCTCAAAGACCAGTCTCCC
A
GTCAGGCTGACTGTGATGAATGAGTGA


Translation (475 aa):
MEVSSELLSNGWTSWQRVLLTASLLTCWLLPITAGVTIESVPPKLVEGENVLLRVDNLPENLRVFVWYRG
V
TDMSLGIALYSLDYSTSVTGPKHSGRETLYRNGSLWIQNVTREDTGYYTLQTISKNGKVVSNTSIFLQV
N
SSLFICGRPSPPALLTIESVPASVAEGGSVLLLVHSLPDNLQSLLWYKGLTVFNKVEIARHRTVKNSSE
M
GPAYSGREIVYSNGSLLLQNVTWEDTGFYTLQIVNRYWKMELAHIYLQVD
TSLSSCCDDFNSVQLRINP
V
PPHAAEGERVLLQVHNLPEDVQTFLWYKGVYSTQSFKITEYSIVTESLINGYAHSGREILFINGSLLLQ
D
VTEKDSGFYTLVTIDSNVKVETAHVQVNVN
KLVTQPVMRVTDSTVRIQGSVVFTCFSDNTGVSIRWLFN
N
QNLQLTERMTLSPSKCQLRIHTVRKEDAGEYQCEAFNPVSSKTSLPVRLTVMNE




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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