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Report for CCDS20288.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20288.1 Public Mus musculus 6 Zfp638 23 108 98 CCDS HistoryNCBI Gene:18139Re-query CCDS DB by CCDS ID:20288.1Re-query CCDS DB by GeneID:18139See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20288.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000204751.2 ENSMUSP00000144989.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204751.2Link to Ensembl Protein Viewer:ENSMUSP00000144989.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204751Re-query CCDS DB by Protein ID:ENSMUSP00000144989
Original member NCBI NM_001355286.1 NP_001342215.1 Updated not alive Link to Nucleotide Sequence:NM_001355286.1Link to Protein Sequence:NP_001342215.1Re-query CCDS DB by Nucleotide ID:NM_001355286Re-query CCDS DB by Protein ID:NP_001342215
Current member NCBI NM_001355286.2 NP_001342215.1 Accepted alive Link to Nucleotide Sequence:NM_001355286.2Link to Protein Sequence:NP_001342215.1Re-query CCDS DB by Nucleotide ID:NM_001355286Re-query CCDS DB by Protein ID:NP_001342215Link to BLAST:NP_001342215.1
Original member NCBI NM_008717.3 NP_032743.2 Updated not alive Link to Nucleotide Sequence:NM_008717.3Link to Protein Sequence:NP_032743.2Re-query CCDS DB by Nucleotide ID:NM_008717Re-query CCDS DB by Protein ID:NP_032743
Current member NCBI NM_008717.4 NP_032743.2 Accepted alive Link to Nucleotide Sequence:NM_008717.4Link to Protein Sequence:NP_032743.2Re-query CCDS DB by Nucleotide ID:NM_008717Re-query CCDS DB by Protein ID:NP_032743Link to BLAST:NP_032743.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342215.1 1926 Q61464-4 1926 99.8962% 0 2
NP_032743.2 1926 Q61464-4 1926 99.8962% 0 2

Chromosomal Locations for CCDS 20288.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 83928855 83930165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83934949 83935010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83941245 83941283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83942834 83943141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83944613 83944887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83946217 83946363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83947819 83947941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83953084 83953142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83953335 83953387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83954711 83954761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83956694 83956762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83957509 83957592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83958184 83958252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83959931 83959968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83961977 83962108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83965529 83965657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83966447 83966488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83967293 83967427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83969117 83969239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83972246 83972283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83976202 83977429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83978022 83978087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83978994 83979909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83983976 83984074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83984777 83984895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83986558 83986623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5781 nt):
ATGTCGAGACCCAGGTTTAATCCTCGAGGGACCTTTCCACTTCAAAGGCCACGAGCACCTAATCCTCCTG
GGATGAGGCCTCCAGGACCATTTGTGAGGCCTGGCTCTATGGGTCTTCCAAGATTTTACCCAGCAGGGAG
AGCCCGTGGAATTCCACACAGATTTCCTGGCCACGGATCTTATCAGAACATGGGACCACAAAGAATGAAT
GTTCAGGTAACTCAACACCGAACCGATCCAAGATTAACCAAAGAAAAATTGGATTTTCCTGAAGCACAAC
AAAAGAAGGGGAAGCCTCATGGTAGTCGGTGGGATGATGAGTCTCATATAACTCCACCGGTAGAAGTGAA
ACAGAGCTCTGTAACCCAGGTTACAGAGCAAAGTCCTAAAGTACAGAGCCGCTACACAAAAGAGAGTGCT
TCAAGTATTTTAGCAAGTTTTGGATTATCAAATGAAGATCTAGAAGAACTTAGCCGCTATCCTGATGAAC
AGCTAACTCCTGAAAATATGCCATTAATATTGAGGGATATAAGAATGCGAAAAATGAGCCGCCGATTACC
TAATTTACCTTCTCACAGCAGAAATAAGGAAACACTTAGTAATGAAACAGTTTCAAGTAATGTGATTGAT
TATGGGCATGCAAGCAAATATGGTTATACAGAAGATCCACTTGAAGTACGTATTTATGATCCTGAAATTC
CAACTGATGAAGTAAAGAATGAATTTCAGCCCCAGCAGAGCATTTCTGCAACTGTTTCAACTCCAAATGT
GATATGTAATTCTGTGTTTCCTGGTGGAGATATGTTTCGTCAGATGGACTTCCCTGGTGAGTCCTCCAGT
CAGTCTTTTTTCCCAGTTGAGAGTGGAACCAAGATGTCAGGCTTACACATTTCAGGACAGTCAGTCCTTG
AACCTGTAAAATCCATCAGCCAGTCTATTAGCCAAACAGTTAGCCAGACAACGAGCCAGTCTCTGAATCC
TCCATCTATGAACCAGGTACCCTTTACATTTGAATTAGATGCAGTTTTACGCCAACAAGAGCGGATCTCA
CAGAAGTCTGTGATCAGTTCAGCTGATGCACATGGTGGACCTACAGAAAGTAAAAAGGATTACCAATCAG
AGGCTGACTTGCCTATTCGGTCTCCCTTTGGGATTGTGAAAGCTTCGTGGCTACCAAAGTTTACACAAGC
TGGTGCCCAGAAAATGAAGAGACTGCCAACCCCTTCTATGATGAATGATTATTATGCAGCATCTCCAAGA
ATATTTCCACATTTGTGTTCTCTGTGTAACGTAGAATGTAGTCATTTGAAGGACTGGATTCAGCATCAAA
ATACCTCCACCCACATTGAGAGCTGTCGGCAGTTAAGGCAACAATACCCTGATTGGAATCCTGAGATCCT
CCCATCCAGAAGAAATGAGAGCAATAGGAAAGAAAATGAAACTCCAAGAAGACGTTCTCATTCCCCCAGC
CCCAGACATTCTAGGAGATCAAGCTCAGGTCACAGAATCCGTCGCTCTCGAAGTCCAGTCCGTTATATCT
ATAGACCAAGGAGTCGAAGTCCAAGAATTTGCCACCGTTTCATTTCTAAATATAGATCCAGATCCAGGTC
CAGATCCAGGTCCCGTTCTCCATATCGTAGTCGGAATCTCCTTAGAAGAAGTCCGAAGTCCTATCGGTCA
GCTAGCCCAGAGAGGACATCAAGAAAATCAGTGAGATCAGATAGGAAAAAGGCATTAGAAGATGGAGGAC
AACGTTCTGTGCATGGGACAGAAGTTACTAAACAGAAACATACTGAAACAGTTGATAAAGGGCTCTCACC
AGCACAAAAGCCAAAACTTGCCAGTGGAACAAAGCCATCAGCGAAATCTCTAAGCTCTGTAAAGAGTGAT
TCACATTTAGGAGCATATTCTGCTCACAAGTCTGAGAATCTGGAAGATGACACTTTACCAGAAGGTAAAC
AGGAGTCTGGTAAAAGTGCTTTGGCCCAGCGGAAGCCACAGAAGGATCAGTCTTTGAGTTCCAACTCAAT
TCTTCTTGTATCTGAACTTCCAGAGGATGGCTTTACTGAAGAAGATATTAGAAAAGCATTTCTGCCATTT
GGAAAAATTAGTGATGTTCTCCTTGTTCCTTGTAGAAATGAGGCTTACTTGGAAATGGAGCTTAGAAAAG
CAGTTACTTCAATCATGAAGTACATTGAAACAATGCCTCTTGTGATAAAAGGAAAAAGTGTGAAAGTATG
TGTTCCAGGAAAGAAAAAGCCACAGAACAAAGAAATGAAGAAGAAACCTTCAGATATTAAGAAATCATCT
GCATCTGCTTTAAAAAAAGAGACAGATGCTTCAAAAACCATGGAAACTGTCAGTTCAAGCTCTTCTGCCA
AATCTGGACAAATAAAGTCATCTACGGTCAAGGTGAACAAATGTGCAGGGAAATCAGCGGGTTCTGTAAA
ATCTGTGGTTACGGTAGCTGCGAAAGGTAAAGCTTCTATCAAAACAGCAAAATCTGGAAAGAAGTCTCTA
GAAGCTAAAAAGTCTGGGAATATCAAAAACAAAGACTCCAATAAACCCGTGACTGTACCAGCAAACTCTG
AAATCAAGGCTAGTTCAGAAGACAAAGCCACTGGAAAGAGTGCTGAAGAAAGTCCTTCAGGTACTTTGGA
GGCCACAGAAAAGGAACCAGTGAACAAGGAATCGGAGGAAATGAGTGTAGTATTTATTTCTAATTTGCCT
AACAAAGGATATTCTACAGAAGAAATTTACAACTTAGCAAAACCATTTGGTGCTTTGAAGGACATTTTGG
TTTTATCATCTCATAAAAAGGCATATATAGAAATAAACAAAAAATCTGCAGATTCTATGGTAAAATTTTA
CACCTGCTTCCCAATATCCATGGATGGAAATCAGCTCTCCATAAGTATGGCTCCTGAGCATGTGGACTTA
AAAGATGAGGAAGCTCTCTTTACAACTTTGATTCAAGAAAATGACCCAGAGGCAAATATTGATAAAATTT
ACAACCGATTTGTACATCTTGACAATTTACCTGAAGATGGACTTCAGTGTGTGCTTTGTGTTGGGCATCA
GTTTGGAAAAGTGGATCGCTATATGTTCATGAGTAACAAAAACAAGGTGATCCTTCAGTTAGAAAGTCCT
GAATCTGCTCTGTCAATGTACAATTTTTTGAAACAAAATCCACAAAACATAGGTGAGCACGTGTTGACCT
GCACTTTATCTCCAAAGACTGACTCAGAGGTTCAAAGGAAGAATGATCTGGAACTAGGAAAAGGAAGTAC
TTTTAGCCCTGACTTGAAAAACAGTCCTGTTGATGAAAGTGAGGTACAAACAGCAGCTGATAGTTCCTCT
GTTAAACCTAGTGAGGTTGAAGAAGAAACTACTTCCAATATTGGAACAGAAACTTCAGTGCATCAGGAAG
AACTTGGTAAGGAAGAACCCAAACAAGCATTGTGTGAGTCTGACTTTGCAATTCAAACACTAGAACTTGA
AGCTCAAGGAGCAGAGGTCAGCATAGAAATTCCTCTTGTAGCATCCACTCCAGCCAATATTGAGTTATTC
AGTGAAAATATAGATGAGTCTGCTTTAAACCAGCAGATGTACACCAGTGACTTTGAAAAGGAAGAGGCAG
AAGTTACAAACCCTGAAACTGAATTAGCAGTATCTGACAGTGTCTTCATAGAAGAAAGGAACATCAAGGG
AATTATAGAAGATTCTCCATCTGAAACAGAAGATATATTTTCTGGAATTGTACAGCCTATGGTAGATGCC
ATAGCTGAAGTGGATAAACATGAAACTGTTTCAGAAGTACTGCCATCTGCTTGTAATGTGACCCAAGCAC
CAGGAAGTTACATTGAAGATGAGAAGGTTGTGAGCAAAAAGGATATTGCTGAAAAAGTTATCTTGGATGA
AAAGGAGGAAGATGAATTTAATGTTAAGGAGACCAGAATGGATTTACAAGTAAAAACAGAGAAGGCTGAG
AAGAATGAAGCTATCATATTTAAAGAAAAATTGGAGAAGATTATAGCAGCAATAAGAGAAAAGCCAATTG
AAAGTTCTGTAATCAAGGCAGACCCAACTAAAGGAGTGGATCAGACCAGTAAGCCTGATGAAACTGGTAA
AAGTAGTGTGCTGACTGTATCAAATGTATATAGTAGTAAATCAAGCATCAAGGCTACTGTGGTCTCTTCT
CCTAAAGCAAAAAGTACACCTTCAAAAACTGAAAGTCACAGCACCTTCCCAAAACCTGTGCTTAGAGAGC
AAATAAAGGCTGAAAAGAAAGTTTCAGCCAAGGAATTTGGTCTGCTTAAAAATACCAGATCAGGCTTGGC
AGAAAGCAACAGTAAATCCAAACCCACTCAGATTGGTGTTAACAGAGGGTGCAGTGGAAGGATCTCAGCC
CTTCAGTGCAAGGATTCTAAAGTGGATTACAAGGACATAACAAAACAGTCTCAGGAAACAGAGACTAAAC
CTCCCATCATGAAACGGGATGACAGCAACAATAAGGCATTGGCTTTGCAGAACACTAAGAATTCTAAAAG
TACTACAGATAGAAGTTCCAAATCGAAAGAGGAACCATTATTTACATTTAATTTGGATGAATTTGTTACT
GTGGATGAAGTCATAGAAGAAGTAAATCCTTCTCAAGCCAAGCAGAATCCATTAAAAGGAAAAAGAAAGG
AAGCCCTCAAAATTTCTCCTTCCCCTGAACTTAACTTAAAAAAGAAAAAGGGGAAAACTTCTGTCCCTCA
CAGTGTTGAGGGAGAATTGTCCTTTGTAACATTAGATGAAATAGGGGAGGAAGAAGATGCAACTGTGCAA
GCTCTAGTCACTGTGGATGAAGTCATTGATGAAGAAGAGCTCAATATGGAAGAAATGGTAAAAAATTCCA
ACTCCCTTCTTACCTTAGATGAACTAATTGACCAAGATGATTGCATTCCCCACAGTGGACCTAAAGATGT
TACTGTCCTGTCGATGGCTGAAGAACAAGATCTACAACAGGAACGCTTGGTAACTGTGGATGAAATTGGA
GAAGTAGAAGAGTCAGCAGACATAACTTTTGCTACTTTGAATGCTAAAAGAGATAAAAGGGATTCTATTG
GGTTCATTTCTTCCCAGATGCCTGAAGACCCTTCCACTTTAGTTACTGTAGATGAAATACAGGATGACAG
CAGTGATTTTCACTTAATGACTTTGGATGAAGTAACTGAAGAGGATGAAAACTCTCTGGCTGATTTTAAC
AACCTTAAAGAAGAGCTGAATTTTGTTACTGTGGATGAAGTTGGAGATGAGGAAGATGGAGACAATGATT
CAAAAGTTGAGTTAGCACGAGGCAAAATTGAGCACCATACAGATAAAAAAGGAAATAGAAAGAGGAGAGC
TGTGGACCCAAAGAAGTCAAAGCTTGATTCTTTCTCCCAAGTAGGTCCAGGAAGTGAAACTGTTACACAA
AAAGATCTGAAAACCATGCCTGAAAGACATTTGGCAGTTGATGACGCTGAACTAAAGGATTCAGAACCTG
ATGAAAAACGCAGGAAGACTCAAGACTCTTCTGTAGGCAAATCAATGACATCTGATGTCCCTGGAGATTT
GGACTTTCTTGTTCCGAAGGCTGGATTTTTCTGTCCAATTTGCTCCCTCTTCTACTCAGGTGAAAAAGCA
ATGGCAAATCACTGCAAGAGCACACGTCATAAACAAAATACAGAGAAGTTCATGGCCAAGCAAAGAAAGG
AAAAGGAGCAGAATGAGACTGAAGAAAGAAGCTCTAGGTGA

Translation (1926 aa):
MSRPRFNPRGTFPLQRPRAPNPPGMRPPGPFVRPGSMGLPRFYPAGRARGIPHRFPGHGSYQNMGPQRMN
VQVTQHRTDPRLTKEKLDFPEAQQKKGKPHGSRWDDESHITPPVEVKQSSVTQVTEQSPKVQSRYTKESA
SSILASFGLSNEDLEELSRYPDEQLTPENMPLILRDIRMRKMSRRLPNLPSHSRNKETLSNETVSSNVID
YGHASKYGYTEDPLEVRIYDPEIPTDEVKNEFQPQQSISATVSTPNVICNSVFPGGDMFRQMDFPGESSS
QSFFPVESGTKMSGLHISGQSVLEPVKSISQSISQTVSQTTSQSLNPPSMNQVPFTFELDAVLRQQERIS
QKSVISSADAHGGPTESKKDYQSEADLPIRSPFGIVKASWLPKFTQAGAQKMKRLPTPSMMNDYYAASPR
IFPHLCSLCNVECSHLKDWIQHQNTSTHIESCRQLRQQYPDWNPEILPSRRNESNRKENETPRRRSHSPS
PRHSRRSSSGHRIRRSRSPVRYIYRPRSRSPRICHRFISKYRSRSRSRSRSRSPYRSRNLLRRSPKSYRS
ASPERTSRKSVRSDRKKALEDGGQRSVHGTEVTKQKHTETVDKGLSPAQKPKLASGTKPSAKSLSSVKSD
SHLGAYSAHKSENLEDDTLPEGKQESGKSALAQRKPQKDQSLSSNSILLVSELPEDGFTEEDIRKAFLPF
GKISDVLLVPCRNEAYLEMELRKAVTSIMKYIETMPLVIKGKSVKVCVPGKKKPQNKEMKKKPSDIKKSS
ASALKKETDASKTMETVSSSSSAKSGQIKSSTVKVNKCAGKSAGSVKSVVTVAAKGKASIKTAKSGKKSL
EAKKSGNIKNKDSNKPVTVPANSEIKASSEDKATGKSAEESPSGTLEATEKEPVNKESEEMSVVFISNLP
NKGYSTEEIYNLAKPFGALKDILVLSSHKKAYIEINKKSADSMVKFYTCFPISMDGNQLSISMAPEHVDL
KDEEALFTTLIQENDPEANIDKIYNRFVHLDNLPEDGLQCVLCVGHQFGKVDRYMFMSNKNKVILQLESP
ESALSMYNFLKQNPQNIGEHVLTCTLSPKTDSEVQRKNDLELGKGSTFSPDLKNSPVDESEVQTAADSSS
VKPSEVEEETTSNIGTETSVHQEELGKEEPKQALCESDFAIQTLELEAQGAEVSIEIPLVASTPANIELF
SENIDESALNQQMYTSDFEKEEAEVTNPETELAVSDSVFIEERNIKGIIEDSPSETEDIFSGIVQPMVDA
IAEVDKHETVSEVLPSACNVTQAPGSYIEDEKVVSKKDIAEKVILDEKEEDEFNVKETRMDLQVKTEKAE
KNEAIIFKEKLEKIIAAIREKPIESSVIKADPTKGVDQTSKPDETGKSSVLTVSNVYSSKSSIKATVVSS
PKAKSTPSKTESHSTFPKPVLREQIKAEKKVSAKEFGLLKNTRSGLAESNSKSKPTQIGVNRGCSGRISA
LQCKDSKVDYKDITKQSQETETKPPIMKRDDSNNKALALQNTKNSKSTTDRSSKSKEEPLFTFNLDEFVT
VDEVIEEVNPSQAKQNPLKGKRKEALKISPSPELNLKKKKGKTSVPHSVEGELSFVTLDEIGEEEDATVQ
ALVTVDEVIDEEELNMEEMVKNSNSLLTLDELIDQDDCIPHSGPKDVTVLSMAEEQDLQQERLVTVDEIG
EVEESADITFATLNAKRDKRDSIGFISSQMPEDPSTLVTVDEIQDDSSDFHLMTLDEVTEEDENSLADFN
NLKEELNFVTVDEVGDEEDGDNDSKVELARGKIEHHTDKKGNRKRRAVDPKKSKLDSFSQVGPGSETVTQ
KDLKTMPERHLAVDDAELKDSEPDEKRRKTQDSSVGKSMTSDVPGDLDFLVPKAGFFCPICSLFYSGEKA
MANHCKSTRHKQNTEKFMAKQRKEKEQNETEERSSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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