NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, June 4, 2024, starting at 8:00 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19958.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19958.1 Public Mus musculus 6 Calu 23 108 98 CCDS HistoryNCBI Gene:12321Re-query CCDS DB by CCDS ID:19958.1Re-query CCDS DB by GeneID:12321See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19958.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090481.13 ENSMUSP00000087967.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090481.13Link to Ensembl Protein Viewer:ENSMUSP00000087967.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000090481Re-query CCDS DB by Protein ID:ENSMUSP00000087967
Original member Current member NCBI NM_184053.3 NP_908942.1 Accepted alive Link to Nucleotide Sequence:NM_184053.3Link to Protein Sequence:NP_908942.1Re-query CCDS DB by Nucleotide ID:NM_184053Re-query CCDS DB by Protein ID:NP_908942Link to BLAST:NP_908942.1

Chromosomal Locations for CCDS 19958.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 29356477 29356697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29361560 29361753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29366040 29366206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29366917 29366977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29372471 29372670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29374399 29374503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGGACCTGCGTCAGTTTCTTATGTGCCTGTCCCTGTGCACAGCCTTTGCTTTGAGCAAGCCTACAGAAA
AGAAGGACCGAGTACACCATGAGCCTCAGCTCAGCGATAAAGTTCACAATGATGCTCAGAATTTTGACTA
TGACCATGATGCCTTCTTGGGTGCAGAAGAGGCAAAGAGTTTTGATCAGCTGACACCAGAAGAGAGCAAG
GAAAGGCTTGGAATGATTGTAGATAAAATAGACGCGGATAAAGATGGGTTTGTGACGGAGGGGGAGCTGA
AATCCTGGATTAAGCACGCCCAGAAGAAATACATTTATGACAATGTTGAAAACCAGTGGCAGGAGTTTGA
TATGAATCAAGACGGCTTAATCTCCTGGGATGAGTACAGAAACGTGACTTATGGCACTTACTTGGATGAT
CCAGATCCTGATGATGGATTTAATTATAAACAGATGATGGTCAGAGATGAGCGGAGGTTTAAAATGGCAG
ACAAGGATGGAGACCTAATTGCCACAAAGGAAGAGTTCACAGCTTTCCTGCACCCTGAGGAATATGACTA
CATGAAAGACATAGTCGTGCAGGAAACCATGGAGGATATAGACAAGAATGCTGATGGGTTCATTGATCTA
GAGGAGTACATTGGTGACATGTACAGTCATGATGGGAATGCTGATGAGCCAGAGTGGGTGAAGACAGAGC
GAGAACAGTTCGTGGAGTTTCGAGATAAGAACCGGGATGGGAAGATGGACAAGGAAGAGACCAAAGACTG
GATCCTCCCCTCAGACTATGACCATGCAGAGGCAGAAGCCAGGCATCTGGTCTATGAGTCAGACCAAAAC
AAGGATGGCAAGCTCACCAAGGAGGAGATTGTCGACAAGTATGATTTATTTGTGGGCAGCCAGGCCACAG
ATTTCGGGGAGGCCTTAGTACGACATGATGAGTTCTGA

Translation (315 aa):
MDLRQFLMCLSLCTAFALSKPTEKKDRVHHEPQLSDKVHNDAQNFDYDHDAFLGAEEAKSFDQLTPEESK
ERLGMIVDKIDADKDGFVTEGELKSWIKHAQKKYIYDNVENQWQEFDMNQDGLISWDEYRNVTYGTYLDD
PDPDDGFNYKQMMVRDERRFKMADKDGDLIATKEEFTAFLHPEEYDYMKDIVVQETMEDIDKNADGFIDL
EEYIGDMYSHDGNADEPEWVKTEREQFVEFRDKNRDGKMDKEETKDWILPSDYDHAEAEARHLVYESDQN
KDGKLTKEEIVDKYDLFVGSQATDFGEALVRHDEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH