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Report for CCDS19827.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19827.1 Public Mus musculus 5 Radil 23 108 98 CCDS HistoryNCBI Gene:231858Re-query CCDS DB by CCDS ID:19827.1Re-query CCDS DB by GeneID:231858See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19827.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063635.14 ENSMUSP00000064539.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063635.14Link to Ensembl Protein Viewer:ENSMUSP00000064539.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000063635Re-query CCDS DB by Protein ID:ENSMUSP00000064539
Original member Current member NCBI NM_178702.4 NP_848817.2 Accepted alive Link to Nucleotide Sequence:NM_178702.4Link to Protein Sequence:NP_848817.2Re-query CCDS DB by Nucleotide ID:NM_178702Re-query CCDS DB by Protein ID:NP_848817Link to BLAST:NP_848817.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848817.2 1070 Q69Z89-5 1070 100% 0 0

Chromosomal Locations for CCDS 19827.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 142485143 142485248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142485413 142485552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142485855 142485991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142486755 142487106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142487447 142487637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142488403 142488553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142494228 142494400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142494736 142494973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142495326 142495438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142497838 142497998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142503913 142503950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142506459 142507088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142508070 142508317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142543405 142543939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3213 nt):
ATGTTTTATGGGACTCAGTTGATCATGTCTCCTCCCACCAAGAATAAGCTGAAGCGACAGAGCCAGCTCC
TATCCACAATGCTGTCCCGGACACTGAGCTACAAGTATCGTGACCTGGATTCCACCTTCTGCAGCCTAGG
TGCCAGTGACGACCCCTCAGAGCTCTCCACGCAGCTCTCGGCCCCCGGGGTCCTCAAGGTGTTTGGGGAC
AGTGTCTGTACAGGCACCCACTATAAGAGTGTCTTGGCCACTGGCTCCTCCAGTGCCCAGGAGCTGGTGA
AAGAGGCACTGGAGCGCTATGCCCTGGACCCTGAGTGTGCTGGCCAGTACGTGCTATGTGATGTTGTGGG
CCAAGCTGGGGACTCTGGGCAGCGGTGGCAGGCCCAGTGCTTCCGAGTATTTGGCGACAATGAGAAGCCC
CTCTTGATCCAGGAGTTATGGAAACCCCGAGAAGGCTTGTCCCGGAGGTTTGAGCTAAGGAAGAAGTCAG
ATGTGGAAGAGCTTGCATCGAGGGATGTGGATACCACCACCGCAGGGATAAACGCCCAAGCCCGGAGGCT
ACAGCGTATCCGTGCCAAGGGAACCCCAGCCCTCACCTCTGAAGCTGCTCAAAGCTCCCCACCGACCAGG
CTGCGCCGTACAGTCAGCGAGACCAGCCTAAGCCCAGCACCATCGCTACCTGAGGCTGCTCAGAGGCCTG
AGGAGCCCGTCCCTGAGGCCATGCGTTACTCGCTGTACCAGTGCCCGCACCTGCTGCTGTTGCAGGGCTA
CAGCCAGCAGCACGACAGCCTGGTGTACGTGCTCAGCAAGGAACGGCACACAGTGGGCCAGCGCACACCG
TCTAGCAAACCCAGCATCAGCTTGTCTGCCCCAGACATCCTGCCCCTGCACTGTACCATTCGCCGCCATC
AGTCCCCAGAGGGTGGCCCGGCAGGGACCAGGCTAGTGCTGGAGCCCATCACAGGGGCTTCGGTGTCAGT
CAACTTCTCAGAAGTGGGAAGGAACCCTGTGGTGCTACAACATGGCGACCTGCTCTCCCTGGGTCTCTAT
TACCTGCTGCTGTTCAAGGACCCTGGGCAGGCACAGCCACTGCCTGCTTGTGCCCTCGCCCGTCTTGGGG
CGGCACCACAGAGCTGTAGAATGTGTGGTGCGGTGCTCAGAGCCCGTGGGGCCCCTTCCTTGCCTGCTGC
TGTGGTCCGGCGGCGGTCACTGCTCCTGGAGTTTGAGCCCGATGTGGAGGACACACTGCTGCAGAGGATC
ATGACACTGATTGAGCCTGGGGGTGACGACCACAAGCTGACACCTGCCTTCCTCCTCTGCCTCTGCATCC
AGCACTCCGCCATGCACTTCCAGCCGGGTACCTTCAGGCATCTCCTGCTCAAGATCTCCAAAAGGGTCCG
AGACACTGTCTGGGAGAAGACCAAAGAACTAGCGGAAAAGCAGGCACAACTCCAGGAGCCCATCTCCTGG
GCCAGCTTCCCCATGGCCGACCTGGTTCCCGACCTGCAGCACATCCTGTTTTGGATGTCAAACTCCATCG
AGCTCCTGTACTTCATCCAGCAGAAGTCCCCGCTGTACGTGCAGAGCATGGAGGAGGAGCTGGACGTCAC
AGGCTCCAAGGAGTCGCTGTTCTCCTGCACACTGACGGCCAGCGAGGAGGCCATGGCTGCCCTGGAGGAG
GTGGTGCTCTATGCTTTCCAGCAGTGCGTGTATTACCTCTCCAAGTGCTTGTATGTCTGCCTCCCGGCCC
TCTTGGAATGCCCCCCATTTCAGACAGAGCGCAGGGAGAGCTGGCGCTCAGGTCCAGCTCTGCCCGAGGA
GCTTCGGCGAGTGGTGTCAGTGTTCCAGGCCACCTTGGACCTCCTGCAGCAGCTGCAGATGCATCCTGAG
GTGGCCTCCCAGATGCTGGCTTATCTCTTCTTCTTCTCTGGCACACTGCTCCTCAACCAGGTCCTAGACA
AGGGGCCCTCTCTGAGTTGCTTCCATTGGCCCAGGGGTGTGCAGGTGTGTGCCCGCCTGCAGCAGTTCCT
GGAGTGGGCCCGGAGTGCTGGCCTTGGAGCACCTGCTGAGCGCTTCTTCCGGAAGCTTTCCTGCACCCTG
CATCTGCTGGCCACTCCCAGGGCTCAGCTCATCCAGATGAGCTGGGCCACCCTGAGGGTCACATTCCCTG
CCCTGAACCCTGCTCAGCTGCACCGGCTTCTGACTCAGTACCAGCTGGCCTCTGCCATGGGCCCTGTGAG
CGCTTGGGAGCCAGGAGCCCCAGACGGCCCGGAGGCCTTCCAGTCAGAGGACATCCTGGAGTCCTATGAA
AACCCGCCGCCCATTGTTCTGCCGAGCCAGGGCTTCCAGGTAGACCTGGAAGCCGACTGCGTGGAGGACA
GCATCTACCAGCACCTGCTCTACATCCGCCACTTCCTGTGGGGGCTGCGGGGCCAAGCCAGCCCTGACAG
TGGGCCTGCCCAGCCCGAGAGCATCGAGGGCCTGTACCACACAATTCCTGAGGGCCATCTGGAAGGCCAT
GGCTGCCCCCTGGCCAATAGGGACCCAGGCAGAGTTGCTGTTGAAACTGCCCCTCCCCATTCTCTTCCTG
TCACGGGAGCTCCCCGGGCTCAGGGTCCCCCTGGAAGACAGCCTACCCGAGGGGACCGCAGGGGCTCCCA
GGCTGGCTCTCTGCACACTGACTCCTCCTGCATGCTCACTCCGCCCAGCACGCCACTGGGCCTGGAGCCT
GCAGGCCCCAGCTGGCCAGAGCCCAGCGGCCTCTGTGGAAGAGCAGTCCTTGACGGGCAGAGGAATGGGC
CAGGTGGTCTGCCTGGTGCAGTCCTAGAAGGAGATGCGATTCAGGATGCTGAGCCTCCTGCTGAGGCCTC
CAGCCCCAGCTCCAGCGCTGAGGACTTCTGCTACGTGTTCATGGTGGAGCTGGAGCGAGGCCCCTCGGGG
CTGGGAATGGGCCTGATTGATGGGATGCACACACCTCTGGGGGCCCAGGGACTCTACATACAGACCCTGC
TTCCCGGGAGCCCCGCGGCATCTGATGGGCGGCTGTCACTCGGAGACCAAATCCTGGAGGTGAATGGCAG
CAGCCTGAGGGGTGTCAGCTACATGAGGGCAGTGGATTTGATCCGACATGGAGGCAAGAAGATGCGATTT
TTAGTTGCCAAGTCTGACATGGAAACGGCCAAGAAAATCCGCTTCCGCAATCCCCCTTCCTAA

Translation (1070 aa):
MFYGTQLIMSPPTKNKLKRQSQLLSTMLSRTLSYKYRDLDSTFCSLGASDDPSELSTQLSAPGVLKVFGD
SVCTGTHYKSVLATGSSSAQELVKEALERYALDPECAGQYVLCDVVGQAGDSGQRWQAQCFRVFGDNEKP
LLIQELWKPREGLSRRFELRKKSDVEELASRDVDTTTAGINAQARRLQRIRAKGTPALTSEAAQSSPPTR
LRRTVSETSLSPAPSLPEAAQRPEEPVPEAMRYSLYQCPHLLLLQGYSQQHDSLVYVLSKERHTVGQRTP
SSKPSISLSAPDILPLHCTIRRHQSPEGGPAGTRLVLEPITGASVSVNFSEVGRNPVVLQHGDLLSLGLY
YLLLFKDPGQAQPLPACALARLGAAPQSCRMCGAVLRARGAPSLPAAVVRRRSLLLEFEPDVEDTLLQRI
MTLIEPGGDDHKLTPAFLLCLCIQHSAMHFQPGTFRHLLLKISKRVRDTVWEKTKELAEKQAQLQEPISW
ASFPMADLVPDLQHILFWMSNSIELLYFIQQKSPLYVQSMEEELDVTGSKESLFSCTLTASEEAMAALEE
VVLYAFQQCVYYLSKCLYVCLPALLECPPFQTERRESWRSGPALPEELRRVVSVFQATLDLLQQLQMHPE
VASQMLAYLFFFSGTLLLNQVLDKGPSLSCFHWPRGVQVCARLQQFLEWARSAGLGAPAERFFRKLSCTL
HLLATPRAQLIQMSWATLRVTFPALNPAQLHRLLTQYQLASAMGPVSAWEPGAPDGPEAFQSEDILESYE
NPPPIVLPSQGFQVDLEADCVEDSIYQHLLYIRHFLWGLRGQASPDSGPAQPESIEGLYHTIPEGHLEGH
GCPLANRDPGRVAVETAPPHSLPVTGAPRAQGPPGRQPTRGDRRGSQAGSLHTDSSCMLTPPSTPLGLEP
AGPSWPEPSGLCGRAVLDGQRNGPGGLPGAVLEGDAIQDAEPPAEASSPSSSAEDFCYVFMVELERGPSG
LGMGLIDGMHTPLGAQGLYIQTLLPGSPAASDGRLSLGDQILEVNGSSLRGVSYMRAVDLIRHGGKKMRF
LVAKSDMETAKKIRFRNPPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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