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Report for CCDS19712.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19712.1 Public Mus musculus 5 Tyw1 23 108 98 CCDS HistoryNCBI Gene:100929Re-query CCDS DB by CCDS ID:19712.1Re-query CCDS DB by GeneID:100929See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19712.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040213.12 ENSMUSP00000037173.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040213.12Link to Ensembl Protein Viewer:ENSMUSP00000037173.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000040213Re-query CCDS DB by Protein ID:ENSMUSP00000037173
Original member NCBI NM_001015876.2 NP_001015876.1 Updated not alive Link to Nucleotide Sequence:NM_001015876.2Link to Protein Sequence:NP_001015876.1Re-query CCDS DB by Nucleotide ID:NM_001015876Re-query CCDS DB by Protein ID:NP_001015876
Current member NCBI NM_001015876.3 NP_001015876.1 Accepted alive Link to Nucleotide Sequence:NM_001015876.3Link to Protein Sequence:NP_001015876.1Re-query CCDS DB by Nucleotide ID:NM_001015876Re-query CCDS DB by Protein ID:NP_001015876Link to BLAST:NP_001015876.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001015876.1 721 Q8BJM7-1 721 100% 0 0

Chromosomal Locations for CCDS 19712.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 130257190 130257193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130258933 130259054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130262819 130262941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130266983 130267084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130267895 130268089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130269166 130269447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130274621 130274743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130277933 130278050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130281781 130281833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130287243 130287361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130288853 130288962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130296624 130296801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130299904 130300039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130325599 130325709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130335246 130335413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130340619 130340840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2166 nt):
ATGGGTCCTCTGGATGTGTGGGACTTGTCGCCTTTGCTGTCACTGTGGATGAACAGGTTCTACATATATA
TGGGCTGTGCCCTGGGCCTTACCCTTTGCATCTGTGTCCAGATCATCAAGAAGCAGGTCACTCGTTCCCA
GGAGAAACGTGTCCCAGGAGCTCCTGATAGCTCCCTCTCCCCTCAGAAGAAGCAGACACACGTTTCTGGA
GTGAAGATTTTTTACGGATCTCAGACGGGCACTGCCAAGGGATTTGCAGTGGTTCTTGCCAAAGCTGTCA
CCTCTCTGGACCTGCCTGTGGCCATTATTAATCTGAAGGAATATGATCCAGATGACAGTCTGATAGGAGA
GATCACTAGTAAAACCGTCTGTGCCTTCCTGGTCGCTACGTACACGGACGGCTGCCCTACAGAGAGTGCA
GAGTGGTTCTGCAAGTGGTTAGAGGAATCAGCTAATGATTTCCGCTTTGGCAAAACTTACCTGAAGGGAC
TTCGCTATGCAGTGTTTGGCCTGGGAGACTCTGCCTACCGGAGCCACTTCAACAAGGTCAGCACGAACGT
TGACAAATGGCTCTGGATGCTCGGTGCCCAGCGGGTGCTGACCCGAGGGGAAGGCGACTGCAATGCAGTT
CAGAGCAAACATGGCAGCATCGAGGCCGACTTCACAGCCTGGAAGACCAAGTTCATCTCCCGGCTGCAGG
CCCTGCAGAGAGGGGAGAAAAAGGCTTGTGGCGGGAACTGCAAGAGAGGGAAGTGTGAGTCGGCCCAGCA
TGGCCCAGGAGAGGCGCGGCCTCACCCGCAAGGCGAATTGCATCCTGGGGATGCTGAGGAGGAAGAGCCC
TGTGAGAGCAGCAGCGAGGACGAGCTCGGGACCCAGGATTATCAGAGCCTGACTTCTGTGGTGGATGTTG
AGGACCTGGGCAACATCATGAACCCCGTGAAGAGGGAAAAGAGAGAAAAGTCTCATCAGGACGGGAAAGC
TGCCATGCAGAGGAACCCAGAGAAGACTGAGGACGGCGAAGGAAGAGCTATGATAACACCTGCTCTGCGG
GAAGCCCTGACTAAACAAGGGTACCAGCTGATTGGCAGCCACTCTGGTGTGAAGCTTTGCAGGTGGACAA
AGTCGATGCTGCGGGGGAGAGGAGGTTGCTACAAACACACATTCTACGGCATTGAGAGCCACCGCTGCAT
GGAAGCCACCCCAAGCTTGGCGTGTGCGAATAAATGTGTCTTCTGCTGGCGGCACCATACCAATCCTGTG
GGCACTGAGTGGCGGTGGAAGATGGACCAGCCAGAATTGATCTTGAAGGAAGCCATTGAGAACCATCAGA
ACATGATTAAACAGTTCAAAGGCGTGCCAGGCCTCAAGGCGGAGCGCTTTGAAGAGGGGATGGAGGTCAA
GCACTGTGCGCTGTCACTCGTGGGTGAGCCGATCATGTACCCAGAAATCAACAGGCTTTTGAAGCTGCTC
CACCAGCACGGCATCTCCAGCTTCCTTGTCACCAATGCGCAGTTCCCTGAGGAGATCAGGAAGCTCACAC
CAGTTACTCAGCTCTACGTGAGCGTGGACGCCAGCACCAGAGACGGCCTGAAGAAGATCGACCGCCCGCT
CTTCAAGGATTTCTGGCAGCGCTTCCTAGACAGTTTGAAAGCCTTATCTGCAAAGCAACAACGAACGGTC
TACAGACTGACGCTTGTGAAGTGTTGGAACGTGGATGAACTCCAGGCCTACGCTGAGCTGGTGTCCTTGG
GGAACCCCGACTTCATCGAGGTCAAGGGTGTGACCTACTGTGGTGAGAGTGCAGCCAGCAGCCTCACCAT
GGCCAATGTCCCTTGGCACGAGGAAGTGGTTCGGTTTGTCCGTGAGCTGGTCGATCTGCTTCCCGACTAT
GAAGTTGCGTGTGAACACGAGCACTCCAACTGCCTCCTGATCGGACACAAGAAGTTTAAGATCGATGGAG
AATGGTGGACATGGATCAATTACAGCCGCTTCCAAGAGCTCGTTCTGCAGTACGAAGAGAGTGGAGGCTC
CAAGACGTTCAGCTCGAGGGATTACATGGCCAGAACCCCACAGTGGGCACTGTTTGGTGCCAGGGAAAGA
GGCTTTGATCCCAAGGACACGAGATACCAGAGGAAGAACAAAACGAAGGACATTTCCGGATGTTGA

Translation (721 aa):
MGPLDVWDLSPLLSLWMNRFYIYMGCALGLTLCICVQIIKKQVTRSQEKRVPGAPDSSLSPQKKQTHVSG
VKIFYGSQTGTAKGFAVVLAKAVTSLDLPVAIINLKEYDPDDSLIGEITSKTVCAFLVATYTDGCPTESA
EWFCKWLEESANDFRFGKTYLKGLRYAVFGLGDSAYRSHFNKVSTNVDKWLWMLGAQRVLTRGEGDCNAV
QSKHGSIEADFTAWKTKFISRLQALQRGEKKACGGNCKRGKCESAQHGPGEARPHPQGELHPGDAEEEEP
CESSSEDELGTQDYQSLTSVVDVEDLGNIMNPVKREKREKSHQDGKAAMQRNPEKTEDGEGRAMITPALR
EALTKQGYQLIGSHSGVKLCRWTKSMLRGRGGCYKHTFYGIESHRCMEATPSLACANKCVFCWRHHTNPV
GTEWRWKMDQPELILKEAIENHQNMIKQFKGVPGLKAERFEEGMEVKHCALSLVGEPIMYPEINRLLKLL
HQHGISSFLVTNAQFPEEIRKLTPVTQLYVSVDASTRDGLKKIDRPLFKDFWQRFLDSLKALSAKQQRTV
YRLTLVKCWNVDELQAYAELVSLGNPDFIEVKGVTYCGESAASSLTMANVPWHEEVVRFVRELVDLLPDY
EVACEHEHSNCLLIGHKKFKIDGEWWTWINYSRFQELVLQYEESGGSKTFSSRDYMARTPQWALFGARER
GFDPKDTRYQRKNKTKDISGC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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