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Report for CCDS19064.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19064.2 Reviewed, update pending Mus musculus 5 Rbm48 23 108 98 CCDS HistoryNCBI Gene:269623Re-query CCDS DB by CCDS ID:19064.2Re-query CCDS DB by GeneID:269623See the combined annotation on chromosome 5 in Sequence Viewer

Public Note for CCDS 19064.2
The coding region has been updated to extend the N-terminus to one that has some support in the available conservation data. The use of an alternative upstream start codon would result in a protein that is 42 aa longer.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 19064.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042753.13 ENSMUSP00000040952.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042753.13Link to Ensembl Protein Viewer:ENSMUSP00000040952.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000042753Re-query CCDS DB by Protein ID:ENSMUSP00000040952
Original member NCBI NM_172991.4 NP_766579.3 Updated not alive Link to Nucleotide Sequence:NM_172991.4Link to Protein Sequence:NP_766579.3Re-query CCDS DB by Nucleotide ID:NM_172991Re-query CCDS DB by Protein ID:NP_766579
Current member NCBI NM_172991.5 NP_766579.4 Pending alive Link to Nucleotide Sequence:NM_172991.5Link to Protein Sequence:NP_766579.4Re-query CCDS DB by Nucleotide ID:NM_172991Re-query CCDS DB by Protein ID:NP_766579Link to BLAST:NP_766579.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766579.4 371 Q8K2X2-1 371 100% 0 0

Chromosomal Locations for CCDS 19064.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 3584721 3584807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3590223 3590803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3591670 3591815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3595255 3595445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3595966 3596202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1242 nt):
ATGATCGTCGATGGGGTCGATCCTTCAGCCAATCCTAGCACGCCTGGTCCATCCTGCTCTCTTATTGGAC
TCAGAGGAGCGCGGCTGGCGGATGTTGTTCTGGCGCGGGGGACTAGAGCCGGCAAGATGGCATCCAGTGA
CGGGAAACCTGGTGGCGTATTCGATCACCACGTCCAGACGGCTGTGTGTGACTCGCGGGCCAAATACCGG
GAGGGCCGACGCCCTCGCGCGGTCAAGGTATATACAATCAATTTGGAGTCTCAGTACTTACTAATACAAG
GAGTTCCTGCAGTGGGAGCCATGAAGGAATTAGTTGAGCGTTTTGCTCTGTATGGTGCGATTGAACAGTA
TAACGCTCTAGATGAATACCCAGCGGAAGATTTTACAGAAGTTTATCTCATTAAATTTGTGAAATTACAG
AGTGCAAGGGTAGCTAAGAAAAAGATGGATGAACAGAGCTTCTTTGGAGGGTTACTTCATGTGTGCTACG
CTCCAGAATTTGAGACAGTTGAAGAAACTAGAAAAAAATTACAAGAAAGAAAGGCTTATATTACAAGAGT
TACTAAAAACCAAGATTGTTACATGGCGAAGAAGAAACCAGTTCCAGAGCAGAAAGGAACAAAAGATTCT
AGACAAGGTTTCCATCCACCTATGCCTGGATTTGGTACAGCTGCTTTAAACACATCTCCTGAGAGTCCTC
CAGAGAACTCGAGTTCTTGTCTTCCTTATTCTTGTGAATTCCCTTTAAGCTGTTTTGCTTCCAAGAGCAC
ATGTTCACGTGGGGAACATGTGGACAGAGTATCAGACTCCTGTAATAGTGCTAGGAACCATGGTGAACTG
TCTAGGCATCGTGACCACAGTGCCTTTTCACCAAAGCTGCAGATGAACACTTACAAAAACTCCGTCCCTT
GCTCTAGTGTGCAAGAGGCCATTGCTACCTCACAGGCAGTTGGCAGGTTCATGCCTAGGACAACACAGCT
GCAGGAGAGGAAACGGCGGCGAGACTGTGATCGAGAACTGGGAACTCTGCTTGAGACACACACAAGCAGT
AACGAGGTTTTGATTGGACCTAAGTTACCAGGTATCCCCACAGTAGATCTGCAGGACGACTCCTTGAATA
CAACGGCAACCTTAATTCGGAGGAAACTTAAAGAGGTGATTTCATCTGTGCCAAAGCCTCCAGAGGACAA
TATAAAAGACGTGTGTACAAGTCACCCAGGAAAACAAAGAAGAAGAATATAG

Translation (413 aa):
MIVDGVDPSANPSTPGPSCSLIGLRGARLADVVLARGTRAGKMASSDGKPGGVFDHHVQTAVCDSRAKYR
EGRRPRAVKVYTINLESQYLLIQGVPAVGAMKELVERFALYGAIEQYNALDEYPAEDFTEVYLIKFVKLQ
SARVAKKKMDEQSFFGGLLHVCYAPEFETVEETRKKLQERKAYITRVTKNQDCYMAKKKPVPEQKGTKDS
RQGFHPPMPGFGTAALNTSPESPPENSSSCLPYSCEFPLSCFASKSTCSRGEHVDRVSDSCNSARNHGEL
SRHRDHSAFSPKLQMNTYKNSVPCSSVQEAIATSQAVGRFMPRTTQLQERKRRRDCDRELGTLLETHTSS
NEVLIGPKLPGIPTVDLQDDSLNTTATLIRRKLKEVISSVPKPPEDNIKDVCTSHPGKQRRRI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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