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Report for CCDS18960.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18960.1 Public Mus musculus 4 Nmnat1 23 108 98 CCDS HistoryNCBI Gene:66454Re-query CCDS DB by CCDS ID:18960.1Re-query CCDS DB by GeneID:66454See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18960.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030845.12 ENSMUSP00000030845.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030845.12Link to Ensembl Protein Viewer:ENSMUSP00000030845.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000030845Re-query CCDS DB by Protein ID:ENSMUSP00000030845
Original member Current member EBI ENSMUST00000105693.1 ENSMUSP00000101318.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105693.1Link to Ensembl Protein Viewer:ENSMUSP00000101318.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105693Re-query CCDS DB by Protein ID:ENSMUSP00000101318
Original member Current member NCBI NM_001356357.1 NP_001343286.1 Accepted alive Link to Nucleotide Sequence:NM_001356357.1Link to Protein Sequence:NP_001343286.1Re-query CCDS DB by Nucleotide ID:NM_001356357Re-query CCDS DB by Protein ID:NP_001343286Link to BLAST:NP_001343286.1
Original member Current member NCBI NM_133435.2 NP_597679.1 Accepted alive Link to Nucleotide Sequence:NM_133435.2Link to Protein Sequence:NP_597679.1Re-query CCDS DB by Nucleotide ID:NM_133435Re-query CCDS DB by Protein ID:NP_597679Link to BLAST:NP_597679.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343286.1 285 Q9EPA7 285 100% 0 0
NP_597679.1 285 Q9EPA7 285 100% 0 0

Chromosomal Locations for CCDS 18960.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 149468796 149469211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149469640 149469782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149473285 149473468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149474428 149474542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (858 nt):
ATGGACTCATCCAAGAAGACAGAGGTGGTTCTCCTGGCCTGTGGCTCTTTTAACCCCATCACCAACATGC
ACCTCAGGCTGTTCGAGCTGGCCAAGGACTATATGCATGCTACAGGAAAATACAGTGTTATCAAAGGCAT
TATCTCACCGGTCGGTGATGCGTACAAGAAGAAAGGGCTCATCCCAGCCCACCACCGAATCATCATGGCA
GAACTTGCCACCAAGAACTCACACTGGGTGGAAGTGGATACGTGGGAAAGTCTTCAGAAGGAGTGGGTGG
AGACTGTGAAGGTGCTCAGATACCATCAGGAGAAGCTGGCAACTGGCAGCTGCAGTTACCCACAAAGCTC
ACCTGCACTGGAAAAGCCTGGGCGGAAGAGGAAGTGGGCTGATCAAAAGCAAGATTCTAGCCCACAGAAG
CCCCAAGAGCCCAAACCAACAGGTGTGCCCAAGGTGAAATTGCTGTGTGGGGCAGATTTACTGGAGTCCT
TCAGCGTGCCCAACTTGTGGAAGATGGAGGACATCACGCAAATCGTGGCCAACTTTGGGCTCATCTGTAT
CACTCGGGCTGGCAGTGACGCTCAGAAATTCATCTACGAGTCCGATGTGCTGTGGAGACATCAGAGCAAC
ATCCACCTGGTGAACGAGTGGATCACCAATGACATCTCGTCCACCAAGATCCGGAGGGCGCTCAGGAGGG
GCCAGAGCATCCGCTACTTGGTACCGGACCTGGTCCAAGAGTACATTGAGAAGCATGAGCTGTACAACAC
GGAGAGCGAAGGCAGGAATGCTGGGGTCACCCTGGCTCCTCTGCAGAGGAACGCCGCAGAGGCCAAGCAC
AACCATTCCACTCTGTGA

Translation (285 aa):
MDSSKKTEVVLLACGSFNPITNMHLRLFELAKDYMHATGKYSVIKGIISPVGDAYKKKGLIPAHHRIIMA
ELATKNSHWVEVDTWESLQKEWVETVKVLRYHQEKLATGSCSYPQSSPALEKPGRKRKWADQKQDSSPQK
PQEPKPTGVPKVKLLCGADLLESFSVPNLWKMEDITQIVANFGLICITRAGSDAQKFIYESDVLWRHQSN
IHLVNEWITNDISSTKIRRALRRGQSIRYLVPDLVQEYIEKHELYNTESEGRNAGVTLAPLQRNAAEAKH
NHSTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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