NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18717.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18717.1 Public Mus musculus 4 Epb41 23 108 98 CCDS HistoryNCBI Gene:269587Re-query CCDS DB by CCDS ID:18717.1Re-query CCDS DB by GeneID:269587See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 18717.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030739.10 ENSMUSP00000030739.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030739.10Link to Ensembl Protein Viewer:ENSMUSP00000030739.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000030739Re-query CCDS DB by Protein ID:ENSMUSP00000030739
Original member Current member EBI ENSMUST00000105972.7 ENSMUSP00000101592.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105972.7Link to Ensembl Protein Viewer:ENSMUSP00000101592.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105972Re-query CCDS DB by Protein ID:ENSMUSP00000101592
Original member Current member EBI ENSMUST00000105981.8 ENSMUSP00000101601.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105981.8Link to Ensembl Protein Viewer:ENSMUSP00000101601.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000105981Re-query CCDS DB by Protein ID:ENSMUSP00000101601
Original member Current member NCBI NM_183428.3 NP_906273.3 Accepted alive Link to Nucleotide Sequence:NM_183428.3Link to Protein Sequence:NP_906273.3Re-query CCDS DB by Nucleotide ID:NM_183428Re-query CCDS DB by Protein ID:NP_906273Link to BLAST:NP_906273.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_906273.3 858 P48193-1 858 100% 0 0

Chromosomal Locations for CCDS 18717.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 131926510 131926608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131928492 131928572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131929694 131929795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131935739 131935867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131957643 131957819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131962924 131962986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131963929 131963970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131964131 131964187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131967788 131967975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131974684 131974856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131975538 131975635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131978810 131978962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131982453 131982540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131989715 131989933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131991211 131991286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 131997499 131997541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132000200 132000304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132003585 132003794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132006958 132007431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2577 nt):
ATGACAACAGAGAAGAGTTTAGCGGCTGAAGCTGAGAATTCTCAGCACCAGCAACAGAAGGAAGAAGGAG
AGGGAGCCACAAACTCAGGCCAACAAGAAACTCAGCTGGAGGAGGCCTCCCAAGCGGCCGCAGCTGAGGG
CAGCGATCAGGGTGAGCAGAAGCTGAAAGCATCCAATGGGGACACTCCAACACATGAAGACTTGACCAAG
AACAAGGAACGGACATCAGAAAGCAGAGGCCTGTCACGACTGCTCTCCTCATTCCTCAAAAGGCCCAAGT
CGCAGGTCTCTGAAGAAGAAGGCAGAGAAGTAGAATCAGAGAAAGAGAAAGGTGAAGGGGGTCAGAAGGA
GATAGAACTTGGAAACAGCCTTGATGAAGACATCATTTTAAAGGCCCCCATTGCAGCTCCTGAACCTGAG
CTCAAAACAGACCCATCTTTGGATCTTCATTCATTAAGCAGTATAGAGACACAGCCAGCTCAGGAAGAAC
ACAGAGAGGACCCAGATTCTGAAACGAAGGAAGGAGAAGGGATTGAAGAGTGCTCTGGAACAGAGGTGAA
AGAGGACCCAGAGTCAAGAGCAGAGAGAGAACCCGAAGCCTCCCAGAAGCCCGTCAGAAGACACAGAAAC
ATGCACTGTAAGGTCTCCTTGTTGGATGACACGGTCTACGAATGTGTTGTAGAGAAACATGCTAAGGGAC
AAGACTTGCTGAAGCGAGTGTGCGAGCACCTCAACCTTTTGGAAGAAGACTACTTTGGTTTAGCCCTGTG
GGACAGCGCAACCTCTAAGACATGGCTGGATTCTGCCAAAGAAATAAAAAAGCAGGTTCGAGGTGTTCCT
TGGAATTTCACATTTAATGTGAAGTTTTATCCACCCGACCCAGCACAATTAACAGAAGACATAACAAGAT
ACTATTTATGTCTTCAGCTTCGGCAGGACATTGTTGCTGGACGTCTGCCCTGTTCCTTTGCAACTTTAGC
CCTACTCGGGTCTTACACGATCCAGTCTGAGCTGGGAGACTATGACCCAGAACTGCACGGCATGGATTAT
GTTAGTGATTTTAAACTGGCTCCAAATCAGACCAAGGAACTTGAAGAAAAGGTCATGGAATTGCATAAAT
CATACAGGTCCATGACTCCAGCTCAGGCTGACTTGGAATTTCTTGAGAATGCCAAAAAGTTGTCCATGTA
TGGAGTTGATCTTCACAAAGCAAAGGACTTGGAGGGAGTGGACATTATTCTCGGCGTCTGCTCCAGCGGC
CTTCTGGTTTACAAAGACAAGTTGAGAATTAACCGCTTTCCTTGGCCCAAAGTGCTAAAGATTTCTTACA
AACGCAGCAGCTTCTTCATCAAGATCCGGCCTGGAGAGCAAGAACATTATGAAAGTACCATCGGCTTCAA
GCTCCCCAGTTATCGAGCGGCCAAGAAACTATGGAAGGTCTGTGTGGAGCATCACACGTTCTTCAGACTC
ACCTCTACAGACACCATCCCCAAAAGCAAGTTTCTTGCCCTGGGATCCAAATTCCGATACAGTGGCCGGA
CTCAAGCTCAGACCAGGCAAGCCAGTGCCCTGATTGACAGGCCTGCTCCACACTTTGAGCGGACAGCAAG
CAAGCGGGCGTCCAGGAGCCTCGATGGAGCAGCAGCTGCTGAGTCCACAGACCGAAGTCCTCGGCCCACC
TCTGCCCCAGCCATTGCTCAGAGTCAGGTCACAGAAGGGCCAGGGGCACCTATCAAAAAAACACCAAAGG
AAGCTGTGAAGGTTGAAGAGAAGCGGGGAGAAGAGCCGGCTGAGCCCGCTGAGCCGGAGCCCACAGAAGC
ATGGAAGGTGGAAAAAACCCACACCGAGGTCACAGTACCTACCTCAAATGGTGACCAAACGCAGAAGCTT
GCAGGAAAAGGTGAAGATCTGATAAGAATGAGGAAGAAAAAGAGAGAGAGACTAGATGGTGAAAACATTT
ATATCAGACATAGCAATTTAATGTTGGAGGATTTAGACAAGAGTCAAGAAGAGATCAAAAAGCACCATGC
CAGCATCAGTGAACTGAAAAAGAACTTTATGGAATCGGTACCCGAACCACGGCCCAGCGAGTGGGACAAG
CGCTTATCTACACACTCACCCTTCCGGACTCTTAACATCAACGGGCAAGTCCCTACTGGAGATGGACCTC
CTCTGGTAAAGACTCAAACTGTCACCATCTCAGATACTGCCAATGCTGTGAAAAGTGAAATCCCAACCAA
AGATGTCCCTATTGTCCACACTGAGACCAAGACCATCACCTATGAAGCTGCCCAGACTGAGGACAGCAAT
GGGGACTTAGACCCTGGAGTCTTGCTGACAGCCCAGACCATCACATCCGAGACCACAAGTAGTACAACCA
CGACACAGATTACCAAGACTGTAAAAGGTGGGATTTCTGAGACCCGGATCGAGAAGAGAATTGTGATCAC
AGGAGATGCCGATATCGACCATGATCAGGTCCTTGTACAAGCCATCAAGGAAGCCAAGGAGCAGCATCCA
GACATGTCAGTGACCAAGGTGGTCGTCCACCAGGAGACAGAGATCTCTGAGGAGTGA

Translation (858 aa):
MTTEKSLAAEAENSQHQQQKEEGEGATNSGQQETQLEEASQAAAAEGSDQGEQKLKASNGDTPTHEDLTK
NKERTSESRGLSRLLSSFLKRPKSQVSEEEGREVESEKEKGEGGQKEIELGNSLDEDIILKAPIAAPEPE
LKTDPSLDLHSLSSIETQPAQEEHREDPDSETKEGEGIEECSGTEVKEDPESRAEREPEASQKPVRRHRN
MHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLALWDSATSKTWLDSAKEIKKQVRGVP
WNFTFNVKFYPPDPAQLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSELGDYDPELHGMDY
VSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMYGVDLHKAKDLEGVDIILGVCSSG
LLVYKDKLRINRFPWPKVLKISYKRSSFFIKIRPGEQEHYESTIGFKLPSYRAAKKLWKVCVEHHTFFRL
TSTDTIPKSKFLALGSKFRYSGRTQAQTRQASALIDRPAPHFERTASKRASRSLDGAAAAESTDRSPRPT
SAPAIAQSQVTEGPGAPIKKTPKEAVKVEEKRGEEPAEPAEPEPTEAWKVEKTHTEVTVPTSNGDQTQKL
AGKGEDLIRMRKKKRERLDGENIYIRHSNLMLEDLDKSQEEIKKHHASISELKKNFMESVPEPRPSEWDK
RLSTHSPFRTLNINGQVPTGDGPPLVKTQTVTISDTANAVKSEIPTKDVPIVHTETKTITYEAAQTEDSN
GDLDPGVLLTAQTITSETTSSTTTTQITKTVKGGISETRIEKRIVITGDADIDHDQVLVQAIKEAKEQHP
DMSVTKVVVHQETEISEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH