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Report for CCDS17789.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17789.1 Public Mus musculus 3 Sass6 23 108 98 CCDS HistoryNCBI Gene:72776Re-query CCDS DB by CCDS ID:17789.1Re-query CCDS DB by GeneID:72776See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17789.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000198311.4 ENSMUSP00000143233.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000198311.4Link to Ensembl Protein Viewer:ENSMUSP00000143233.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000198311Re-query CCDS DB by Protein ID:ENSMUSP00000143233
Original member Current member NCBI NM_028349.3 NP_082625.2 Accepted alive Link to Nucleotide Sequence:NM_028349.3Link to Protein Sequence:NP_082625.2Re-query CCDS DB by Nucleotide ID:NM_028349Re-query CCDS DB by Protein ID:NP_082625Link to BLAST:NP_082625.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082625.2 654 Q80UK7-1 654 100% 0 0

Chromosomal Locations for CCDS 17789.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 116595114 116595178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116603462 116603522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116605197 116605276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116605665 116605769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116607323 116607494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116608384 116608449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116610264 116610383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116613906 116614097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116618256 116618450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116618560 116618649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116618724 116618903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116619251 116619332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116620058 116620191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116621383 116621508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116627073 116627167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116628518 116628612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116628708 116628814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1965 nt):
ATGAGTCAAGTTCTGTTCCAGCAGCTTGTTCCCTTGCTAGTGAAATGCAAAGACTGCGAGGAGAGGAGAG
GGAGCGTTAGAGTGAGCATTGAGCTGCAGTCCCTTTCGAATCCAGTACACAGGAAGGATTTAGTCATCCG
TCTGACTGATGATACAGATCCGTTTTTTCTGTATAACCTTGTTATATCTGAGGAAGATTTTCAAAGTTTA
AAATTGCAGCAAGGTCTCCTGGTGGACTTCTTAGCTTTCCCACAGAAGTTTATAGACCTCCTTCAGCAGT
GTATGCAAGAACACGCGAAAGAGACTCCAAGGTTCCTGCTGCAGCTTCTTTCTTCAGCCACTCTTTTGGA
GAACTCACCGGTCCTTTTAAACGTAGTGGAGACAAATCCTTTTAAGCATCTTATTCACCTGTCACTAAAG
CTTTTACCTGGAAATGATGTAGAAATAAAGAAATTTCTAGCAGGATGTTTGAAATGTAGCAAGGAAGAAA
AATTATCACTGACTAGATCACTAGATGATGTTACCAGGCAACTGCACATTACACAAGAGACGTTGTCGGA
AAAAATGCAAGAATTAGATAAGCTGCGGAGTGAATGGGCCTCGCACACAGCATCGCTGACGAATAAGCAC
TCTCAGGAGTTAACAGCTGAGAAGGAGAAGGCCTTGCAGACCCAAGTTCAGTGCCAACAGCAGCACGAGC
AACAGAAAAAGGAACTGGAAACCCTCCATCAACGGAATATCCACCAGCTACAAAGCAGATTGTCCGAGTT
AGAGGCAGCTAATAAAGAGCTCACCGAGAGGAAGTATAAAGGAGACTCGACTGTCCGAGAGCTAAAGGCG
AAGCTGGCTGGCGTGGAAGAGGAGCTGCAGCGGGCCAAGCAAGAGGTCCTTTCTCTGAGAAGAGAGAATT
GTACTCTGGATACTGAATGCCACGAGAAAGAAAAGCACATCAACCAGCTACAAACAAAAGTGGCCGTTTT
AGAACAGGAGATCAAAGATAAAGACCAGCTTGTTCTGAGAACAAAAGAAGCATTCGATACAATCCAAGAG
CAAAAGGTGGCTTTAGAAGAAAATGGTGAGAAAAATCAGATACAACTGGGAAAACTTGAAGCTACAATAA
AATCATTATCAGCAGAACTTCTAAAGGCAAATGAGATCATCAAGAAGTTACAAGGAGATCTTAAAACTCT
GATGGGTAAATTGAAACTGAAGAATACAGTTACTATTCAGCAAGAAAAACTATTGGCTGAGAAAGAAGAA
ATGCTACAAAAGGAGCGAAAGGAATCACAGGACGCTGGGCAGTTTCTTCGTGCCAAAGAGCAAGAGGTAT
GCAGATTACAGGAACAATTAGAAACTACAGTTCAGAAACTCGAAGAAAGTAAACAACTTTTGAAAAATAA
TGAAAAATTAATCACGTGGCTAAACAAAGAGCTAAATGAAAATCAGCTGGTAAGAAAACAGGACACATTG
GGAACCTCTGCCACCCCACATTCTACTAGCAACAGCACCATCAGAAGTGGGCTCTCTCCCAATCTGAATG
TGGTTGATAGACTAAATTACCCAAGCTGTGGAATTGGCTATCCTGTCTCCTCTGCATTGACATTCCAGAA
TGCTTTTCCTCATGTAGTAGCTGCCAAAAACACCAGCCACCCTATCTCTGGACCAAAGGTTCACTTTAAC
CTGCAGCTTACAAAACCAAGCGCTTCGATAGATGGGCAGCCGGGAGCCGCTGTTAACAGGCCTTGTTCAA
ATGATAAGGAAAATGGTGAAACTTTAGGATTGGAATCCAAATACTTGAAGAGAAGAGAAGCTAGCATTCC
TTTACGCGGACTTAGCCAGAATCTGTTGAGTGACTCAGACCATCAGAAAGACGGCATGCTGGGAGCGTTC
CAGCTATCTTCCAAACCCACCGTTCTCCCCTCCTCGTCTTCAGCCTACTTCCCTGGGCAGTTACCAAGTA
GTTAA

Translation (654 aa):
MSQVLFQQLVPLLVKCKDCEERRGSVRVSIELQSLSNPVHRKDLVIRLTDDTDPFFLYNLVISEEDFQSL
KLQQGLLVDFLAFPQKFIDLLQQCMQEHAKETPRFLLQLLSSATLLENSPVLLNVVETNPFKHLIHLSLK
LLPGNDVEIKKFLAGCLKCSKEEKLSLTRSLDDVTRQLHITQETLSEKMQELDKLRSEWASHTASLTNKH
SQELTAEKEKALQTQVQCQQQHEQQKKELETLHQRNIHQLQSRLSELEAANKELTERKYKGDSTVRELKA
KLAGVEEELQRAKQEVLSLRRENCTLDTECHEKEKHINQLQTKVAVLEQEIKDKDQLVLRTKEAFDTIQE
QKVALEENGEKNQIQLGKLEATIKSLSAELLKANEIIKKLQGDLKTLMGKLKLKNTVTIQQEKLLAEKEE
MLQKERKESQDAGQFLRAKEQEVCRLQEQLETTVQKLEESKQLLKNNEKLITWLNKELNENQLVRKQDTL
GTSATPHSTSNSTIRSGLSPNLNVVDRLNYPSCGIGYPVSSALTFQNAFPHVVAAKNTSHPISGPKVHFN
LQLTKPSASIDGQPGAAVNRPCSNDKENGETLGLESKYLKRREASIPLRGLSQNLLSDSDHQKDGMLGAF
QLSSKPTVLPSSSSAYFPGQLPSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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