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Report for CCDS17528.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17528.1 Public Mus musculus 3 Ints3 23 108 98 CCDS HistoryNCBI Gene:229543Re-query CCDS DB by CCDS ID:17528.1Re-query CCDS DB by GeneID:229543See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17528.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029542.11 ENSMUSP00000029542.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029542.11Link to Ensembl Protein Viewer:ENSMUSP00000029542.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000029542Re-query CCDS DB by Protein ID:ENSMUSP00000029542
Original member Current member EBI ENSMUST00000071488.7 ENSMUSP00000071422.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071488.7Link to Ensembl Protein Viewer:ENSMUSP00000071422.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000071488Re-query CCDS DB by Protein ID:ENSMUSP00000071422
Original member NCBI NM_145540.3 NP_663515.2 Updated not alive Link to Nucleotide Sequence:NM_145540.3Link to Protein Sequence:NP_663515.2Re-query CCDS DB by Nucleotide ID:NM_145540Re-query CCDS DB by Protein ID:NP_663515
Current member NCBI NM_145540.4 NP_663515.2 Accepted alive Link to Nucleotide Sequence:NM_145540.4Link to Protein Sequence:NP_663515.2Re-query CCDS DB by Nucleotide ID:NM_145540Re-query CCDS DB by Protein ID:NP_663515Link to BLAST:NP_663515.2
Original member NCBI NM_178876.3 NP_849207.2 Updated not alive Link to Nucleotide Sequence:NM_178876.3Link to Protein Sequence:NP_849207.2Re-query CCDS DB by Nucleotide ID:NM_178876Re-query CCDS DB by Protein ID:NP_849207
Current member NCBI NM_178876.4 NP_849207.2 Accepted alive Link to Nucleotide Sequence:NM_178876.4Link to Protein Sequence:NP_849207.2Re-query CCDS DB by Nucleotide ID:NM_178876Re-query CCDS DB by Protein ID:NP_849207Link to BLAST:NP_849207.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663515.2 1041 Q7TPD0-1 1041 100% 0 0
NP_849207.2 1041 Q7TPD0-1 1041 100% 0 0

Chromosomal Locations for CCDS 17528.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 90392028 90392105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90392212 90392368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90392528 90392600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90392791 90392891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90393096 90393263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90393746 90393794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90394074 90394187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90394323 90394398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90395138 90395206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90396378 90396531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90400304 90400423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90400595 90400639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90401068 90401171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90401405 90401459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90401843 90401972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90402308 90402427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90403079 90403185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90403506 90403597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90403985 90404064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90404514 90404601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90406174 90406365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90408502 90408599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90409998 90410127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90411201 90411345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90413530 90413596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90415158 90415242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90415493 90415606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90421736 90421819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90424004 90424087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90432804 90432950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3126 nt):
ATGGAGTTACAGAAGGGAAAGGGGACCGTAGCAGCTGCTGCATCAGGAGCAGCGGGAGGTGGAGGAGGAG
GAGCGGGAGCAGGAGCCCCAGGAGGGGGGAGGCTGCTACTTTCAACCAGTTTGGATGCCAAGGATGAGTT
AGAGGAGAGGTTGGAAAGGTGCATGAGTATTGTCACATCGATGACCGCTGGTGTCTCCGAGAGAGAGGCC
AATGATGCTCTCAATGCCTATGTGTGCAAAGGACCTCCCCAGCATGAGGAGATCTGCCTAGGCCTGTTTA
CTCTTGTCCTCACTGAGCCTGCCCAAGCCCAGAAGTGTTACCGGGACTTGGCTCTGGTGAGTCGTGATGG
TATGAACATCGTCCTGAACAAGATCAACCAGCTACTTATGGAGAAGTACTTGAAGCTGCAAGATACCTGC
CGTACTCAGTTGGTGTGGTTGGTTCGGGAACTAGTAAAGAGTGGAGTTCTGGGAGCTGATGGCGTTTGCA
TGACATTTATGAAGCAGATTGCAGGTGGCGATGTTACAGCCAAAAATATCTGGTTGGCAGAAAGTGTCCT
GGATATCCTGACGGAGCAGAGGGAGTGGGTGCTGAAGAGCAGCATCCTCATTGCCATGGCTGTGTACACG
TACCTCCGACTTATTGTGGACCACCATGGGACTGCCCAGCTCCAGACCCTTCGGCAGAAGGAAGTTGACT
TCTGCATCTCCTTGCTTCGGGAACGGTTCATGGAATGTTTGATGATTGGCCGGGACCTTGTAAGATTACT
TCAGAATGTTGCTAGGATACCAGAATTTGAACTACTGTGGAAAGATATCATCCATAACCCTCAGGCCTTG
AGTCCTCAGTTTACAGGTATCCTACAGCTACTTCAGTCAAGAACATCCCGAAAATTTCTAGCCTGTCGTC
TAACCCCAGACATGGAAACGAAGCTCCTCTTCATGACATCCCGGGTGCGGTTTGGCCAGCAAAAGCGGTA
CCAGGACTGGTTCCAGCGCCAGTACCTCTCAACCCCTGACAGTCAGTCTCTGCGCTGTGACCTCATTCGA
TACATCTGTGGGGTAGTCCACCCCTCTAACGAAGTGCTGAGTTCTGATATCTTGCCCCGGTGGGCCATCA
TTGGCTGGCTCCTGACAACATGCACGTCCAACGTTGCTGCCTCCAATGCCAAGCTGGCTTTGTTTTATGA
CTGGCTGTTCTTCAGCCCAGAAAAGGATAGTATTATGAACATAGAGCCAGCTATCCTGGTCATGCATCAC
TCCATGAAGCCCCACCCAGCCATCACTGCCACGCTCCTGGACTTCATGTGCCGAATCATTCCTAACTTCT
ACCCACCATTGGAAGGCCACGTTCGGCAGGGTGTCTTTTCTTCCCTCAACCACATTGTGGAGAAACGAGT
CTTGGCACACTTGGCTCCCCTGTTTGACAACCCTAAATTGGATAAAGAGCTTCGGTCCATGCTTCGGGAG
AAGTTTCCTGAGTTCTGCAGCTCGCCCTCCCCTCCTGTGGAAGTCAAAATTGAAGAGCCTGTTTCCATGG
AAATGGACAACCACCTCTCAGATAAGGATGAGAGTTGCTATGACAATGCAGAGGCAGCCTTCAGTGATGA
TGAGGAGGATCTTAATAGCAAAGGGAAGAAGAGAGAGTTTCGCTTCCACCCCATCAAGGAGACTGTCGTG
GAGGAGCCGGTTGATGTCACCCCTTACCTTGATCAGTTGGACGAGTCCCTGAGGGACAAAGTGCTACAGC
TACAGAAGGGAAGTGATACAGAGGCCCAGTGTGAGGTTATGCAGGAAATTGTGGATCAGGTCCTGGAGGA
AGACTTTGACTCGGAGCAACTGTCTGTCCTGGCTTCCTGCCTACAGGAGCTCTTCAAGGCCCACTTTCGA
GGGGAGGTGTTGCCTGAAGAGGTCACTGAAGAGTCCCTGGAGGAGTCAGTAGGGAAACCACTGTACCTAA
TATTTAGGAACCTGTGCCAGATGCAGGAGGACAACAGCAGCTTCTCGCTGCTTCTGGACCTTCTCTCCGA
GCTGTATCAAAAGCAACCCAAGATCGGCTACCACCTGCTCTACTACTTGAGGGCAAGCAAAGCCGCCGCA
GGGAAGATGAACCTGTATGAGTCGTTTGCCCAGGCTACCCAGCTGGGTGATCTGCACACCTGTCTAATGA
TGGACATGAAGGCCTGCCAAGAGGATGATGTGCGACTGCTATGCCACCTCACACCTTCCATCTACACAGA
GTTTCCAGATGAAACTTTGAGGAGTGGGGAGCTGCTGAACATGATTGTGGCTGTTATTGACTCTGCACAG
CTCCAGGAGCTGGTCTGCCATGTGATGATGGGGAACCTGGTCATGTTTCGGAAGGACTCAGTCCTCAACA
TACTCATTCAGAGCCTAGACTGGGAAACGTTTGAGCAGTACTGTGCCTGGCAGCTCTTCCTGGCCCACAA
CATCCCCTTGGAGACCATTATTCCTATTCTCCAGCACCTCAAATACAAGGAGCACCCAGAGGCCCTGTCC
TGTCTCCTGCTTCAGCTACGGAGAGAGAAGCCGAGTGAGGAGATGGTGAAGATGGTGCTGAGCAGGCCCT
GCCATCCTGATGACCAGTTCACCACCAGCATCCTGAGGCACTGGTGCATGAAGCACGACGAGCTGCTGGC
AGAGCACATCAAGGCGCTGCTCATCAAGAACAACAGCCTGCCCCGCAAGAGGCAGAGCCTAAGAAGCTCT
AGCAGCAAGCTGGCCCAGCTGACCCTGGAACAGATCCTGGAACACTTGGACAACCTAAGGCTCAACCTAG
CCAACACCAAGCAGAACTTCTTTAGCCAGACACCAATCCTCCAGGCGCTGCAGCATGTCCAGGCAAGCTG
TGACGAAGCTCACAAGATGAAGTTCAGTGACCTCTTCTCCCTGGCGGAGGAATATGAGGACTCTTCCACT
AAGCCACCCAAGAGCCGGCGGAAGGCAGCTCTGTCCAGCCCTCGAAGTCGAAAGAATGCTACCCAGCCCC
CCAATGCTGAAGAGGAGTCAGGCTCCAGCAGTGCCTCGGAGGAAGAAGATACAAAGCCTAAGCCTACCAA
ACGAAAACGAAAAGGCTCCTCTGCTGTGGGTTCTGACAGTGACTGA

Translation (1041 aa):
MELQKGKGTVAAAASGAAGGGGGGAGAGAPGGGRLLLSTSLDAKDELEERLERCMSIVTSMTAGVSEREA
NDALNAYVCKGPPQHEEICLGLFTLVLTEPAQAQKCYRDLALVSRDGMNIVLNKINQLLMEKYLKLQDTC
RTQLVWLVRELVKSGVLGADGVCMTFMKQIAGGDVTAKNIWLAESVLDILTEQREWVLKSSILIAMAVYT
YLRLIVDHHGTAQLQTLRQKEVDFCISLLRERFMECLMIGRDLVRLLQNVARIPEFELLWKDIIHNPQAL
SPQFTGILQLLQSRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQDWFQRQYLSTPDSQSLRCDLIR
YICGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNVAASNAKLALFYDWLFFSPEKDSIMNIEPAILVMHH
SMKPHPAITATLLDFMCRIIPNFYPPLEGHVRQGVFSSLNHIVEKRVLAHLAPLFDNPKLDKELRSMLRE
KFPEFCSSPSPPVEVKIEEPVSMEMDNHLSDKDESCYDNAEAAFSDDEEDLNSKGKKREFRFHPIKETVV
EEPVDVTPYLDQLDESLRDKVLQLQKGSDTEAQCEVMQEIVDQVLEEDFDSEQLSVLASCLQELFKAHFR
GEVLPEEVTEESLEESVGKPLYLIFRNLCQMQEDNSSFSLLLDLLSELYQKQPKIGYHLLYYLRASKAAA
GKMNLYESFAQATQLGDLHTCLMMDMKACQEDDVRLLCHLTPSIYTEFPDETLRSGELLNMIVAVIDSAQ
LQELVCHVMMGNLVMFRKDSVLNILIQSLDWETFEQYCAWQLFLAHNIPLETIIPILQHLKYKEHPEALS
CLLLQLRREKPSEEMVKMVLSRPCHPDDQFTTSILRHWCMKHDELLAEHIKALLIKNNSLPRKRQSLRSS
SSKLAQLTLEQILEHLDNLRLNLANTKQNFFSQTPILQALQHVQASCDEAHKMKFSDLFSLAEEYEDSST
KPPKSRRKAALSSPRSRKNATQPPNAEEESGSSSASEEEDTKPKPTKRKRKGSSAVGSDSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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