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Report for CCDS17500.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17500.1 Public Mus musculus 3 Slc50a1 23 108 98 CCDS HistoryNCBI Gene:19729Re-query CCDS DB by CCDS ID:17500.1Re-query CCDS DB by GeneID:19729See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17500.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029565.10 ENSMUSP00000029565.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029565.10Link to Ensembl Protein Viewer:ENSMUSP00000029565.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000029565Re-query CCDS DB by Protein ID:ENSMUSP00000029565
Original member NCBI NM_009057.3 NP_033083.2 Updated not alive Link to Nucleotide Sequence:NM_009057.3Link to Protein Sequence:NP_033083.2Re-query CCDS DB by Nucleotide ID:NM_009057Re-query CCDS DB by Protein ID:NP_033083
Current member NCBI NM_009057.4 NP_033083.2 Accepted alive Link to Nucleotide Sequence:NM_009057.4Link to Protein Sequence:NP_033083.2Re-query CCDS DB by Nucleotide ID:NM_009057Re-query CCDS DB by Protein ID:NP_033083Link to BLAST:NP_033083.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033083.2 221 Q9CXK4 221 100% 0 0

Chromosomal Locations for CCDS 17500.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 89268497 89268598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89268673 89268792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89269050 89269211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89269827 89269950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89270062 89270139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89270386 89270465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (666 nt):
ATGGAGGCGGGCGGCGTGGCAGACTCTTTCCTTTCTAGTGCCTGCGTGCTCTTCACCCTGGGCATGTTCT
CCACTGGCCTCTCGGACCTCAGGCATATGCAGAGGACACGGAGCGTGGACAACATCCAGTTCCTGCCTTT
TCTCACCACGGATGTCAACAACCTGAGCTGGCTGAGTTACGGAGTCTTGAAGGGAGATGGGACCCTTATC
ATCGTCAATAGCGTGGGGGCCGTGCTTCAGACTCTTTATATCCTGGCATATCTGCACTACAGTCCTCAGA
AGCATGGTGTGCTCCTGCAGACGGCAACCCTGCTGGCTGTCCTTCTCCTGGGTTATGGCTACTTTTGGCT
TCTGGTGCCGGACCTTGAGGCCCGGCTTCAGCAGCTAGGCCTCTTCTGTAGCGTCTTTACCATCAGCATG
TACCTCTCCCCACTGGCTGATTTGGCCAAGATCGTTCAGACTAAATCAACCCAGCGCCTCTCCTTCTCCC
TGACCATTGCCACGCTCTTTTGCTCCGCCTCTTGGTCTATTTACGGGTTTCGCCTCCGAGACCCATACAT
CACGGTGCCCAACCTTCCAGGAATCCTCACCAGCTTAATCCGCCTCGGGCTTTTCTGCAAGTACCCTCCA
GAGCAAGACAGGAAGTACCGCCTCCTGCAGACCTGA

Translation (221 aa):
MEAGGVADSFLSSACVLFTLGMFSTGLSDLRHMQRTRSVDNIQFLPFLTTDVNNLSWLSYGVLKGDGTLI
IVNSVGAVLQTLYILAYLHYSPQKHGVLLQTATLLAVLLLGYGYFWLLVPDLEARLQQLGLFCSVFTISM
YLSPLADLAKIVQTKSTQRLSFSLTIATLFCSASWSIYGFRLRDPYITVPNLPGILTSLIRLGLFCKYPP
EQDRKYRLLQT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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