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Report for CCDS17386.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17386.1 Public Mus musculus 3 Ssr3 23 108 98 CCDS HistoryNCBI Gene:67437Re-query CCDS DB by CCDS ID:17386.1Re-query CCDS DB by GeneID:67437See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17386.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029414.11 ENSMUSP00000029414.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029414.11Link to Ensembl Protein Viewer:ENSMUSP00000029414.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000029414Re-query CCDS DB by Protein ID:ENSMUSP00000029414
Original member Current member NCBI NM_026155.3 NP_080431.1 Accepted alive Link to Nucleotide Sequence:NM_026155.3Link to Protein Sequence:NP_080431.1Re-query CCDS DB by Nucleotide ID:NM_026155Re-query CCDS DB by Protein ID:NP_080431Link to BLAST:NP_080431.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080431.1 185 Q9DCF9-1 185 100% 0 0

Chromosomal Locations for CCDS 17386.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 65381968 65382034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 65382992 65383123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 65387732 65387830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 65391325 65391451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 65392405 65392537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (558 nt):
ATGGCTCCCAAAGGCGGCTCCAAGCAGCAGTCCGAGGAGGACCTGCTCCTTCAGGATTTCAGCCGCAACC
TGTCGGCCAAATCGTCGGCGCTGTTCTTCGGGAACGCGTTCATCGTGTCTGCCATCCCCATCTGGTTGTA
TTGGAGAATATGGCATATGGATCTCATCCAGTCTGCTGTGCTCTACAGTGTGATGACCTTAGTAAGCACT
TACTTAGTAGCCTTCGCGTACAAGAATGTAAAATTTGTTCTGAAGCACAAAGTGGCACAGAAGAGGGAGG
ATGCTGTTTCCAAAGAAGTGACTCGAAAGCTTTCTGAAGCTGATAATAGGAAGATGTCCCGGAAGGAGAA
AGACGAAAGAATCCTGTGGAAGAAGAATGAAGTTGCTGATTATGAAGCTACAACATTCTCCATCTTCTAT
AACAACACTCTGTTCCTGGTTCTGGTTATTGTTGCTTCCTTCTTTATACTGAAGAACTTCAACCCCACAG
TAAACTACATTTTGTCCATAAGTGCTTCATCTGGACTCATCGCCCTCTTGTCTACTGGCTCCAAATAG

Translation (185 aa):
MAPKGGSKQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLYWRIWHMDLIQSAVLYSVMTLVST
YLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDERILWKKNEVADYEATTFSIFY
NNTLFLVLVIVASFFILKNFNPTVNYILSISASSGLIALLSTGSK


Links Key
 Links to:   History report
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