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Report for CCDS17233.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17233.1 Public Mus musculus 3 Mrps28 23 108 98 CCDS HistoryNCBI Gene:66230Re-query CCDS DB by CCDS ID:17233.1Re-query CCDS DB by GeneID:66230See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17233.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042148.5 ENSMUSP00000038305.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042148.5Link to Ensembl Protein Viewer:ENSMUSP00000038305.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000042148Re-query CCDS DB by Protein ID:ENSMUSP00000038305
Original member Current member NCBI NM_025434.3 NP_079710.3 Accepted alive Link to Nucleotide Sequence:NM_025434.3Link to Protein Sequence:NP_079710.3Re-query CCDS DB by Nucleotide ID:NM_025434Re-query CCDS DB by Protein ID:NP_079710Link to BLAST:NP_079710.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079710.3 186 Q9CY16 186 100% 0 0

Chromosomal Locations for CCDS 17233.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 8802246 8802414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 8899986 8900167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 8923587 8923796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (561 nt):
ATGGCGGCGCTGTGTAGGTCCCACGCCGGGACTGCTGGGAGCCGTTTCTTGAGAGCGCTTGTCTTCTCCA
AGCCTTTGCGAAATGCAAGCACGGAGAGTGGTTCCGAGAGCGCAACCCACGACTCCTCCGCTCCTCGGGC
GCGTTCAGGCGGCTTCGCGAGCGCTCTGGAGCGACACTCGGACTTGCAGCGGAAGGCGGAGCTCCGACTG
GAGTCTCCAAAACCTGTGGAGTCCTTCGCCTCCATGCTGAGACACTCTCCACTGACCCAGCTGGGGCCTG
CCAAGGACAAACTGGTCATCGGGCGCATCTTCCATATCGTGGAGGACGATCTCTACATAGATTTTGGTGG
CAAGTTTCACTGTGTGTGTAAAAGACCAGATGTGGATGGCGAGAAATACCAGAGGGGCACCAGGGTCCGG
CTGCGTCTCCTGGATCTTGAGCTGACATCTAGGTTCCTGGGTGGGACCACAGATACAACTATACTGGAGG
CTGATGCAGTTCTCTTAGGACTCCAAGAGATCAGGGACTCAAAATCAAGAGAGGAGCAACCCAGCAAGTA
A

Translation (186 aa):
MAALCRSHAGTAGSRFLRALVFSKPLRNASTESGSESATHDSSAPRARSGGFASALERHSDLQRKAELRL
ESPKPVESFASMLRHSPLTQLGPAKDKLVIGRIFHIVEDDLYIDFGGKFHCVCKRPDVDGEKYQRGTRVR
LRLLDLELTSRFLGGTTDTTILEADAVLLGLQEIRDSKSREEQPSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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