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Report for CCDS16685.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16685.1 Public Mus musculus 2 Gabpb1 23 108 98 CCDS HistoryNCBI Gene:14391Re-query CCDS DB by CCDS ID:16685.1Re-query CCDS DB by GeneID:14391See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16685.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103227.7 ENSMUSP00000099517.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103227.7Link to Ensembl Protein Viewer:ENSMUSP00000099517.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000103227Re-query CCDS DB by Protein ID:ENSMUSP00000099517
Original member Current member EBI ENSMUST00000110424.8 ENSMUSP00000106054.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110424.8Link to Ensembl Protein Viewer:ENSMUSP00000106054.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110424Re-query CCDS DB by Protein ID:ENSMUSP00000106054
Original member NCBI NM_001271467.1 NP_001258396.1 Updated not alive Link to Nucleotide Sequence:NM_001271467.1Link to Protein Sequence:NP_001258396.1Re-query CCDS DB by Nucleotide ID:NM_001271467Re-query CCDS DB by Protein ID:NP_001258396
Current member NCBI NM_001271467.2 NP_001258396.1 Accepted alive Link to Nucleotide Sequence:NM_001271467.2Link to Protein Sequence:NP_001258396.1Re-query CCDS DB by Nucleotide ID:NM_001271467Re-query CCDS DB by Protein ID:NP_001258396Link to BLAST:NP_001258396.1
Original member NCBI NM_207669.2 NP_997552.1 Updated not alive Link to Nucleotide Sequence:NM_207669.2Link to Protein Sequence:NP_997552.1Re-query CCDS DB by Nucleotide ID:NM_207669Re-query CCDS DB by Protein ID:NP_997552
Current member NCBI NM_207669.3 NP_997552.1 Accepted alive Link to Nucleotide Sequence:NM_207669.3Link to Protein Sequence:NP_997552.1Re-query CCDS DB by Nucleotide ID:NM_207669Re-query CCDS DB by Protein ID:NP_997552Link to BLAST:NP_997552.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258396.1 382 Q00420-3 382 100% 0 0
NP_997552.1 382 Q00420-3 382 100% 0 0

Chromosomal Locations for CCDS 16685.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 126630230 126630382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126639229 126639344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126646563 126646745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126650068 126650181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126650509 126650620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126652233 126652427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126653555 126653722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126658470 126658577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1149 nt):
ATGTCCCTGGTAGATTTGGGGAAGAAGCTTTTAGAAGCGGCACGAGCCGGTCAAGATGATGAAGTTCGCA
TTTTGATGGCAAATGGAGCTCCTTTTACTACAGACTGGTTGGGAACTTCTCCACTTCATCTGGCCGCACA
GTATGGGCATTTCTCTACCACAGAGGTTCTTCTCCGAGCCGGTGTAAGTAGAGATGCCAGGACCAAAGTG
GACCGGACACCACTGCACATGGCGGCTTCTGAGGGCCATGCCAACATAGTAGAAGTTTTGCTTAAGCATG
GTGCTGACGTCAATGCAAAGGATATGTTAAAGATGACAGCTCTGCATTGGGCAACAGAACATAATCATCA
AGAGGTGGTGGAGCTTTTAATCAAATATGGTGCTGATGTACACACGCAGAGTAAATTTTGTAAAACTGCA
TTTGATATTTCAATAGACAATGGAAATGAAGATTTAGCAGAGATATTACAGATTGCTATGCAGAACCAAA
TCAACACCAACCCGGAGAGTCCTGACACTGTGACAATACACGCTGCCACACCACAGTTCATCATTGGACC
CGGAGGGGTGGTGAACCTCACAGATGAAACAGGAGTATCTGCTGTTCAGTTTGGAAACTCCTCTACGTCA
GTATTAGCTACGTTAGCTGCCTTAGCTGAAGCTTCTGCCCCATTGTCCAATTCTTCAGAAACTCCAGTGG
CCACAGAGGAAGTGGTTACCGCAGAATCTGTGGATGGTGCAATTCAGCAAGTAGTTAGCTCAGGGGGTCA
GCAAGTCATCACGATAGTTACAGATGGAATCCAGCTGGGGAATTTGCACTCCATACCAACCAGTGGGATG
GGTCAGCCCATCATTGTGACGATGCCCGATGGACAGCAAGTATTGACAGTACCAGCAACAGACATTGCTG
AAGAAACTGTCATCAGTGAAGAGCCACCAGCTAAGAGACAGTGTATGGAAATAATTGAGAGCCGGGTGGA
ATGTGCAGAAATTGAAGAGAGAGAAGCGCTTCAGAAACAGCTGGATGAAGCCAACCGAGAGGCCCAGAAA
TACCGACAGCAGCTGCTTAAGAAGGAGCAGGAGGCAGAGGCCTACAGGCAGAAGCTGGAGGCCATGACAC
GCATCCAGACCAACAAAGAAGCCGTTTAG

Translation (382 aa):
MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKV
DRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTA
FDISIDNGNEDLAEILQIAMQNQINTNPESPDTVTIHAATPQFIIGPGGVVNLTDETGVSAVQFGNSSTS
VLATLAALAEASAPLSNSSETPVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLHSIPTSGM
GQPIIVTMPDGQQVLTVPATDIAEETVISEEPPAKRQCMEIIESRVECAEIEEREALQKQLDEANREAQK
YRQQLLKKEQEAEAYRQKLEAMTRIQTNKEAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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