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Report for CCDS16482.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16482.2 Public Mus musculus 2 Lmo2 23 108 98 CCDS HistoryNCBI Gene:16909Re-query CCDS DB by CCDS ID:16482.2Re-query CCDS DB by GeneID:16909See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 16482.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 16482.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111140.2 ENSMUSP00000106770.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111140.2Link to Ensembl Protein Viewer:ENSMUSP00000106770.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111140Re-query CCDS DB by Protein ID:ENSMUSP00000106770
Original member NCBI NM_008505.4 NP_032531.2 Updated not alive Link to Nucleotide Sequence:NM_008505.4Link to Protein Sequence:NP_032531.2Re-query CCDS DB by Nucleotide ID:NM_008505Re-query CCDS DB by Protein ID:NP_032531
Current member NCBI NM_008505.5 NP_032531.2 Accepted alive Link to Nucleotide Sequence:NM_008505.5Link to Protein Sequence:NP_032531.2Re-query CCDS DB by Nucleotide ID:NM_008505Re-query CCDS DB by Protein ID:NP_032531Link to BLAST:NP_032531.2

Chromosomal Locations for CCDS 16482.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 103970462 103970712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103976005 103976220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103980875 103981094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (687 nt):
ATGATTCGCTCTCTCTCTTTGGCGTTTGAAGGGAGCGCGGTGACTGTCCTTGAGCGTGGAGGGGCGAGCT
CGCCAGCGGAGCGACCGAGCAAGAGGAGGCGCAGGAGCGGCGGCGCCCGAGCACCCGAGGGGGTCCGAGT
CCAGGCAGCTAGCCAGCCACGCGCCACAAAGGGAGCGCCCCCGCCGCCCGGCACGCCGCCCCCCTCCCCA
ATGTCCTCGGCCATCGAAAGGAAGAGCCTGGACCCGTCTGAGGAACCCGTGGATGAGGTGCTGCAGATAC
CCCCATCCCTGCTGACATGTGGTGGCTGCCAGCAGAACATAGGGGACCGCTACTTCCTGAAAGCCATCGA
CCAGTACTGGCATGAGGATTGCCTCAGCTGTGACCTCTGTGGGTGTCGGCTGGGAGAGGTGGGGAGGCGC
CTCTACTACAAGCTGGGACGGAAATTGTGCAGGAGAGACTATCTCAGGCTTTTTGGTCAGGATGGTCTCT
GTGCATCCTGTGACAAGCGGATCCGTGCCTATGAGATGACGATGCGGGTGAAAGACAAAGTGTATCACCT
GGAGTGTTTCAAATGCGCCGCCTGTCAGAAGCATTTCTGTGTAGGTGACAGATACCTTCTCATCAACTCC
GACATAGTGTGTGAACAAGACATCTACGAGTGGACCAAGATCAATGGGATCATCTAG

Translation (228 aa):
MIRSLSLAFEGSAVTVLERGGASSPAERPSKRRRRSGGARAPEGVRVQAASQPRATKGAPPPPGTPPPSP
MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRR
LYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINS
DIVCEQDIYEWTKINGII


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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