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Report for CCDS15563.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15563.1 Public Mus musculus 1 Sccpdh 23 108 98 CCDS HistoryNCBI Gene:109232Re-query CCDS DB by CCDS ID:15563.1Re-query CCDS DB by GeneID:109232See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15563.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040538.9 ENSMUSP00000040956.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040538.9Link to Ensembl Protein Viewer:ENSMUSP00000040956.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000040538Re-query CCDS DB by Protein ID:ENSMUSP00000040956
Original member NCBI NM_178653.3 NP_848768.1 Updated not alive Link to Nucleotide Sequence:NM_178653.3Link to Protein Sequence:NP_848768.1Re-query CCDS DB by Nucleotide ID:NM_178653Re-query CCDS DB by Protein ID:NP_848768
Current member NCBI NM_178653.4 NP_848768.1 Accepted alive Link to Nucleotide Sequence:NM_178653.4Link to Protein Sequence:NP_848768.1Re-query CCDS DB by Nucleotide ID:NM_178653Re-query CCDS DB by Protein ID:NP_848768Link to BLAST:NP_848768.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848768.1 429 Q8R127 429 100% 0 0

Chromosomal Locations for CCDS 15563.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 179668356 179668545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179670583 179670695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179676391 179676471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179678041 179678170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179678880 179678929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179679585 179679715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179680492 179680609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179681433 179681552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179681651 179681707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179684205 179684316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179685696 179685777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179686572 179686677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1290 nt):
ATGGCGACGGAGCAGAGGCCTTTCCACCTGGTGGTGTTCGGCGCCTCTGGCTTCACCGGCCAGTTCGTGA
CGGAGGAGGTGGCCCGGGAGCAGATAGCCTCGGAGCAGAGCTCCCGCCTGCCCTGGGCCGTGGCGGGTCG
CTCCAAGGAGAAGCTGCAGCAAGTGCTGGAGAAGGCTGCCCAGAAACTGGGAAGACCATCACTATCATCT
GAAGTTGGAGTCATAATCTGTGATATCAGTAATCCAGCCTCACTTGATGAAATGGCTAAACAGGCAAAGC
TTGTCCTCAACTGCGTAGGACCGTATCGATTTTATGGAGAACCTGTAGTAAAAGCATGTATTGAAAATGG
AACAAGTTGTATTGACATCTGTGGGGAACCTCAGTTTCTGGAACTAATGCATGCGAAGTATCATGAGAAA
GCTGCAGAGAAGGGGGTTTATATCATTGGAAGCAGTGGCTTTGACTCCATCCCAGCAGATCTAGGAGTGC
TATACACCAGGAACCAGATGAACGGTACTTTGACTGCTGTAGAAAGCTTCCTGACAATAAATACAGGACC
TGAGGGGTTGTGTATTCATGATGGAACCTGGAAGTCGGCAATTTATGGTTTTGGCGATAAGGGTAGTTTA
AGAAAACTACGGAGTGTATCATGTCTGAAACCTGTCCCAATTGTTGGTACAAAGTTGAAAAGAAGGTGGC
CAGTCAGCTATTGTAGAGAGCTGAACTCGTATTCCATTCCTTTTTTGGGATCTGATATATCTGTTGTGAA
AAGGACTCAGCGTTACTTACATGAAAATTTAGAGGACTCACCAGTTCAGTATGCTGCTTATGTGACGGTG
GGAGGCATCACCTCTGTGATTAAGCTGATGTTTGCAGGACTGTTCTTTTTATTCTTTGTGAAGTTTAGCA
TTGGAAGACAACTTCTCATAAAATTCCCATGGCTCTTTTCCTTTGGCTATTTTTCAAAACAAGGTCCAAC
ACAAAAACAGATGGATGAGACATCATTTACAATGACATTCTTTGGTCAAGGATACAGCCATGGCACTTGT
GTTGAAAAGAACAAACCAAATATCCGAATCTGCACTCAAGTGAAGGGACCAGAGGCTGGCTACGTGGCTA
CTCCCATAGCCATGGTTCAGGCTGCCATGACTTTTCTGAGTGACGCCTCTGACCTTCCAAAAGGGGGCGG
TGTCTTTACACCTGGAGCAGCTTTCTCCAGAACAAAGTTGATTGACAGACTCAACAAACATGGCATTGAA
TTTAGTGTCATTAGCAGCTCCGAAGTCTAA

Translation (429 aa):
MATEQRPFHLVVFGASGFTGQFVTEEVAREQIASEQSSRLPWAVAGRSKEKLQQVLEKAAQKLGRPSLSS
EVGVIICDISNPASLDEMAKQAKLVLNCVGPYRFYGEPVVKACIENGTSCIDICGEPQFLELMHAKYHEK
AAEKGVYIIGSSGFDSIPADLGVLYTRNQMNGTLTAVESFLTINTGPEGLCIHDGTWKSAIYGFGDKGSL
RKLRSVSCLKPVPIVGTKLKRRWPVSYCRELNSYSIPFLGSDISVVKRTQRYLHENLEDSPVQYAAYVTV
GGITSVIKLMFAGLFFLFFVKFSIGRQLLIKFPWLFSFGYFSKQGPTQKQMDETSFTMTFFGQGYSHGTC
VEKNKPNIRICTQVKGPEAGYVATPIAMVQAAMTFLSDASDLPKGGGVFTPGAAFSRTKLIDRLNKHGIE
FSVISSSEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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