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Report for CCDS14912.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14912.1 Public Mus musculus 1 Il18rap 23 108 98 CCDS HistoryNCBI Gene:16174Re-query CCDS DB by CCDS ID:14912.1Re-query CCDS DB by GeneID:16174See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14912.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027237.11 ENSMUSP00000027237.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027237.11Link to Ensembl Protein Viewer:ENSMUSP00000027237.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000027237Re-query CCDS DB by Protein ID:ENSMUSP00000027237
Original member NCBI NM_010553.4 NP_034683.1 Updated not alive Link to Nucleotide Sequence:NM_010553.4Link to Protein Sequence:NP_034683.1Re-query CCDS DB by Nucleotide ID:NM_010553Re-query CCDS DB by Protein ID:NP_034683
Current member NCBI NM_010553.5 NP_034683.1 Accepted alive Link to Nucleotide Sequence:NM_010553.5Link to Protein Sequence:NP_034683.1Re-query CCDS DB by Nucleotide ID:NM_010553Re-query CCDS DB by Protein ID:NP_034683Link to BLAST:NP_034683.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034683.1 614 Q9Z2B1 614 100% 0 0

Chromosomal Locations for CCDS 14912.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 40524313 40524382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40524794 40525115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40525204 40525387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40531476 40531626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40537058 40537123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40539224 40539347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40541887 40542038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40542990 40543127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40547767 40547940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40548625 40549088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1845 nt):
ATGCTCTGTTTGGGCTGGGTGTTTCTTTGGTTTGTTGCAGGAGAGAAGACCACAGGATTTAATCATTCAG
CTTGTGCCACCAAAAAACTTCTGTGGACATATTCTGCAAGGGGTGCAGAGAATTTTGTCCTATTTTGTGA
CTTACAAGAGCTTCAGGAGCAAAAATTCTCCCATGCAAGTCAACTGTCACCAACACAAAGTCCTGCTCAC
AAACCTTGCAGTGGCAGTCAGAAGGACCTATCTGATGTCCAGTGGTACATGCAACCTCGGAGTGGAAGTC
CACTAGAGGAGATCAGTAGAAACTCTCCCCATATGCAGAGTGAAGGCATGCTGCATATATTGGCCCCACA
GACGAACAGCATTTGGTCATATATTTGTAGACCCAGAATTAGGAGCCCCCAGGATATGGCCTGTTGTATC
AAGACAGTCTTAGAAGTTAAGCCTCAGAGAAACGTGTCCTGTGGGAACACAGCACAAGATGAACAAGTCC
TACTTCTTGGCAGTACTGGCTCCATTCATTGTCCCAGTCTCAGCTGCCAAAGTGATGTACAGAGTCCAGA
GATGACCTGGTACAAGGATGGAAGACTACTTCCTGAGCACAAGAAAAATCCAATTGAGATGGCAGATATT
TATGTTTTTAATCAAGGCTTGTATGTATGTGATTACACACAGTCAGATAATGTGAGTTCCTGGACAGTCC
GAGCTGTGGTTAAAGTGAGAACCATTGGTAAGGACATCAATGTGAAGCCGGAAATTCTGGATCCCATTAC
AGATACACTGGACGTAGAGCTTGGAAAGCCTTTAACTCTCCCCTGCAGAGTACAGTTTGGCTTCCAAAGA
CTTTCAAAGCCTGTGATAAAGTGGTATGTCAAAGAATCTACACAGGAGTGGGAAATGTCAGTATTTGAGG
AGAAAAGAATTCAATCCACTTTCAAGAATGAAGTCATTGAACGTACCATCTTCTTGAGAGAAGTTACCCA
GAGAGATCTCAGCAGAAAGTTTGTTTGCTTTGCCCAGAACTCCATTGGGAACACAACACGGACCATACGG
CTGAGGAAGAAGGAAGAGGTGGTGTTTGTATACATCCTTCTCGGCACGGCCTTGATGCTGGTGGGCGTTC
TGGTGGCAGCTGCTTTCCTCTACTGGTACTGGATTGAAGTTGTCCTGCTCTGTCGAACCTACAAGAACAA
AGATGAGACTCTGGGGGATAAGAAGGAATTCGATGCATTTGTATCCTACTCGAATTGGAGCTCTCCTGAG
ACTGACGCCGTGGGATCTCTGAGTGAGGAACACCTGGCTCTGAATCTTTTCCCGGAAGTGCTAGAAGACA
CCTATGGGTACAGATTGTGTTTGCTTGACCGAGATGTGACCCCAGGAGGAGTGTATGCAGATGACATTGT
GAGCATCATTAAGAAAAGCCGAAGAGGAATATTTATCCTGAGTCCCAGCTACCTCAATGGACCCCGTGTC
TTTGAGCTACAAGCAGCAGTGAATCTTGCCTTGGTTGATCAGACACTGAAGTTGATTTTAATTAAGTTCT
GTTCCTTCCAAGAGCCAGAATCTCTTCCTTACCTTGTCAAAAAGGCTCTGCGGGTTCTCCCCACAGTCAC
ATGGAAAGGCTTGAAGTCGGTCCACGCCAGTTCCAGGTTCTGGACCCAAATTCGTTACCACATGCCTGTG
AAGAACTCCAACAGGTTTATGTTCAACGGGCTCAGAATTTTCCTGAAGGGCTTTTCCCCTGAAAAGGACC
TAGTGACACAGAAACCCCTGGAAGGAATGCCCAAGTCTGGGAATGACCACGGAGCTCAGAACCTCCTTCT
CTACAGTGACCAGAAGAGGTGCTGA

Translation (614 aa):
MLCLGWVFLWFVAGEKTTGFNHSACATKKLLWTYSARGAENFVLFCDLQELQEQKFSHASQLSPTQSPAH
KPCSGSQKDLSDVQWYMQPRSGSPLEEISRNSPHMQSEGMLHILAPQTNSIWSYICRPRIRSPQDMACCI
KTVLEVKPQRNVSCGNTAQDEQVLLLGSTGSIHCPSLSCQSDVQSPEMTWYKDGRLLPEHKKNPIEMADI
YVFNQGLYVCDYTQSDNVSSWTVRAVVKVRTIGKDINVKPEILDPITDTLDVELGKPLTLPCRVQFGFQR
LSKPVIKWYVKESTQEWEMSVFEEKRIQSTFKNEVIERTIFLREVTQRDLSRKFVCFAQNSIGNTTRTIR
LRKKEEVVFVYILLGTALMLVGVLVAAAFLYWYWIEVVLLCRTYKNKDETLGDKKEFDAFVSYSNWSSPE
TDAVGSLSEEHLALNLFPEVLEDTYGYRLCLLDRDVTPGGVYADDIVSIIKKSRRGIFILSPSYLNGPRV
FELQAAVNLALVDQTLKLILIKFCSFQEPESLPYLVKKALRVLPTVTWKGLKSVHASSRFWTQIRYHMPV
KNSNRFMFNGLRIFLKGFSPEKDLVTQKPLEGMPKSGNDHGAQNLLLYSDQKRC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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