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Report for CCDS14831.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14831.2 Public Mus musculus 1 Stau2 23 108 98 CCDS HistoryNCBI Gene:29819Re-query CCDS DB by CCDS ID:14831.2Re-query CCDS DB by GeneID:29819See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 14831.1
The coding region has been updated to represent an alternate splice pattern that is more supported by the available transcript and protein data. The protein resulting from the update contains four DSRM (Double-stranded RNA binding motif) domains, while the previous representation only had one DSRM domain.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 14831.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054668.12 ENSMUSP00000053190.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054668.12Link to Ensembl Protein Viewer:ENSMUSP00000053190.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000054668Re-query CCDS DB by Protein ID:ENSMUSP00000053190
Original member Current member EBI ENSMUST00000162751.7 ENSMUSP00000124505.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162751.7Link to Ensembl Protein Viewer:ENSMUSP00000124505.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162751Re-query CCDS DB by Protein ID:ENSMUSP00000124505
Original member Current member NCBI NM_025303.3 NP_079579.2 Accepted alive Link to Nucleotide Sequence:NM_025303.3Link to Protein Sequence:NP_079579.2Re-query CCDS DB by Nucleotide ID:NM_025303Re-query CCDS DB by Protein ID:NP_079579Link to BLAST:NP_079579.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079579.2 570 Q8CJ67-1 570 100% 0 0

Chromosomal Locations for CCDS 14831.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 16229773 16229866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16231003 16231091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16345704 16346011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16366079 16366139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16369755 16369886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16374674 16374811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16389821 16390033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16392517 16392624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16394051 16394210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16440323 16440458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16463035 16463194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16486020 16486133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1713 nt):
ATGGCAAACCCCAAAGAGAAAACTCCAGTGTGTCTGGTAAATGAGTTAGCCCGTTTCCATAGCATCCAAC
CCCAGTATAAGCTTCTGAATGAAAGCGGGCCTGCTCATTCGAAGATGTTTTCGGTGCAGCTGAGTCTTGG
CGAGCAGACATGGGAATCCGAAGGGAGCAGTATAAAGAAGGCCCAACAAGCTGTTGCTAACAAAGCTTTG
ACTGAATCTACGCTTCCCAAACCAGTTCAGAAACCACCTAAAAGTAATGTCAATAATAACCCAGGTAGTA
TAACTCCAACTGTGGAACTGAATGGGCTCGCTATGAAAAGGGGAGAGCCTGCCATCTACAGGCCACTAGA
TCCAAAGCCATTCCCAAATTATAGAGCTAACTACAACTTCCGGGGCATGTACAATCAGAGGTATCATTGC
CCAATGCCCAAGATCTTTTATGTTCAGTTAACTGTAGGAAATAATGAATTCTTTGGTGAAGGGAAGACTC
GACAAGCTGCCAGACACAATGCTGCGATGAAAGCGCTTCAAGCCCTACAGAATGAGCCAATTCCAGAAAA
GTCTCCCCAGAATGGTGAATCAGGAAAAGAAATGGATGACGATAAAGATGCAAATAAATCTGAAATAAGC
TTAGTGTTTGAGATTGCGCTGAAGAGAAATATGCCTGTCAGTTTTGAGGTTATTAAAGAAAGTGGACCAC
CACATATGAAGAGTTTTGTAACTCGGGTGTCAGTGGGAGAATTTTCTGCAGAAGGAGAGGGAAATAGCAA
AAAACTCTCCAAGAAGCGTGCCGCAACCACTGTCTTACAGGAGCTTAAAAAACTCCCACCTCTTCCTGTG
GTAGAGAAGCCAAAACTATTTTTTAAAAAACGCCCTAAAACAATAGTAAAGGCTGGACCCGACTATGGTC
AAGGAATGAACCCCATTAGCCGCCTGGCTCAGATCCAGCAAGCCAGAAAGGAAAAGGAGCCTGATTACAT
CCTACTCTCAGAACGAGGAATGCCTCGCCGTCGAGAGTTCGTAATGCAGGTCAAGGTAGGCAATGAAGTT
GCGACTGGAACAGGACCCAATAAAAAGATAGCCAAAAAAAATGCTGCTGAAGCAATGCTGTTACAGCTTG
GCTATAAAGCGTCCACCAGTCTTCAGGATCCGCTCGACAAGACAGGTGAAAACAAAGGATGGAGTGGTCC
AAAGCCTGGGTTTCCTGAACCAACAAATAACACTCCAAAAGGAATTCTTCATCTTTCTCCTGATGTTTAT
CAAGAGATGGAAGCTAGCCGCCACAGAGTGACCTCTGGCACAACTCTAAGCTACTTATCTCCCAAAGATA
TGAACCAACCTTCAAGCTCTTTCTTCAGTGTGTCTCCCTCATCAACTAGTTCAGCCACAGTTGCCAGGGA
ACTCCTTATGAATGGAACATCTCCTACTGCTGAAGCCATAGGTTTAAAAGGAAGTTCTCCTACTTCCCCT
TGTTCTTCAGTACAGCCTTCAAAACAACTGGAATATTTAGCAAGGATTCAAGGCTTTCAGGCAGCCTTAA
GTGCCTTGAAACAGTTTTCTGAACAAGGACTGGAATCAATTGATGGGGCAGTGAATGTTGAAAAGGGTTC
TCTTGAAAAACAAGCCAAGCATCTGCGGGAGAAAGCAGACAATAACCAGGCGAAGCCGGCCTCCATCTCT
CAGGACTGCAAGAAATCAAAGTCGGCCATCTAG

Translation (570 aa):
MANPKEKTPVCLVNELARFHSIQPQYKLLNESGPAHSKMFSVQLSLGEQTWESEGSSIKKAQQAVANKAL
TESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHC
PMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEIS
LVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPV
VEKPKLFFKKRPKTIVKAGPDYGQGMNPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEV
ATGTGPNKKIAKKNAAEAMLLQLGYKASTSLQDPLDKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVY
QEMEASRHRVTSGTTLSYLSPKDMNQPSSSFFSVSPSSTSSATVARELLMNGTSPTAEAIGLKGSSPTSP
CSSVQPSKQLEYLARIQGFQAALSALKQFSEQGLESIDGAVNVEKGSLEKQAKHLREKADNNQAKPASIS
QDCKKSKSAI


Links Key
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