NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS14680.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14680.1 Public Homo sapiens X SLITRK2 24 110 108 CCDS HistoryNCBI Gene:84631Re-query CCDS DB by CCDS ID:14680.1Re-query CCDS DB by GeneID:84631See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14680.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335565.6 ENSP00000334374.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000335565.6Link to Ensembl Protein Viewer:ENSP00000334374.5Re-query CCDS DB by Nucleotide ID:ENST00000335565Re-query CCDS DB by Protein ID:ENSP00000334374
Original member Current member EBI ENST00000370490.1 ENSP00000359521.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370490.1Link to Ensembl Protein Viewer:ENSP00000359521.1Re-query CCDS DB by Nucleotide ID:ENST00000370490Re-query CCDS DB by Protein ID:ENSP00000359521
Original member Current member NCBI NM_001144003.3 NP_001137475.1 Accepted alive Link to Nucleotide Sequence:NM_001144003.3Link to Protein Sequence:NP_001137475.1Re-query CCDS DB by Nucleotide ID:NM_001144003Re-query CCDS DB by Protein ID:NP_001137475Link to BLAST:NP_001137475.1
Original member Current member NCBI NM_001144004.3 NP_001137476.1 Accepted alive Link to Nucleotide Sequence:NM_001144004.3Link to Protein Sequence:NP_001137476.1Re-query CCDS DB by Nucleotide ID:NM_001144004Re-query CCDS DB by Protein ID:NP_001137476Link to BLAST:NP_001137476.1
Original member Current member NCBI NM_001144005.3 NP_001137477.1 Accepted alive Link to Nucleotide Sequence:NM_001144005.3Link to Protein Sequence:NP_001137477.1Re-query CCDS DB by Nucleotide ID:NM_001144005Re-query CCDS DB by Protein ID:NP_001137477Link to BLAST:NP_001137477.1
Original member Current member NCBI NM_001144006.2 NP_001137478.1 Accepted alive Link to Nucleotide Sequence:NM_001144006.2Link to Protein Sequence:NP_001137478.1Re-query CCDS DB by Nucleotide ID:NM_001144006Re-query CCDS DB by Protein ID:NP_001137478Link to BLAST:NP_001137478.1
Original member Current member NCBI NM_001144008.2 NP_001137480.1 Accepted alive Link to Nucleotide Sequence:NM_001144008.2Link to Protein Sequence:NP_001137480.1Re-query CCDS DB by Nucleotide ID:NM_001144008Re-query CCDS DB by Protein ID:NP_001137480Link to BLAST:NP_001137480.1
Original member Current member NCBI NM_001144009.2 NP_001137481.1 Accepted alive Link to Nucleotide Sequence:NM_001144009.2Link to Protein Sequence:NP_001137481.1Re-query CCDS DB by Nucleotide ID:NM_001144009Re-query CCDS DB by Protein ID:NP_001137481Link to BLAST:NP_001137481.1
Original member Current member NCBI NM_001144010.2 NP_001137482.1 Accepted alive Link to Nucleotide Sequence:NM_001144010.2Link to Protein Sequence:NP_001137482.1Re-query CCDS DB by Nucleotide ID:NM_001144010Re-query CCDS DB by Protein ID:NP_001137482Link to BLAST:NP_001137482.1
Original member Current member NCBI NM_032539.5 NP_115928.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032539.5Link to Protein Sequence:NP_115928.1Re-query CCDS DB by Nucleotide ID:NM_032539Re-query CCDS DB by Protein ID:NP_115928Link to BLAST:NP_115928.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137475.1 845 Q9H156-1 845 100% 0 0
NP_001137476.1 845 Q9H156-1 845 100% 0 0
NP_001137477.1 845 Q9H156-1 845 100% 0 0
NP_001137478.1 845 Q9H156-1 845 100% 0 0
NP_001137480.1 845 Q9H156-1 845 100% 0 0
NP_001137481.1 845 Q9H156-1 845 100% 0 0
NP_001137482.1 845 Q9H156-1 845 100% 0 0
NP_115928.1 845 Q9H156-1 845 100% 0 0

Chromosomal Locations for CCDS 14680.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 145822426 145824963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2538 nt):
ATGCTGAGCGGCGTTTGGTTCCTCAGTGTGTTAACCGTGGCCGGGATCTTACAGACAGAGAGTCGCAAAA
CT
GCCAAAGACATTTGCAAGATCCGCTGTCTGTGCGAAGAAAAGGAAAACGTACTGAATATCAACTGTGA
G
AACAAAGGATTTACAACAGTTAGCCTGCTCCAGCCCCCCCAGTATCGAATCTATCAGCTTTTTCTCAAT
GGA
AACCTCTTGACAAGACTGTATCCAAACGAATTTGTCAATTACTCCAACGCGGTGACTCTTCACCTAG
GT
AACAACGGGTTACAGGAGATCCGAACGGGGGCATTCAGTGGCCTGAAAACTCTCAAAAGACTGCATCT
C
AACAACAACAAGCTTGAGATATTGAGGGAGGACACCTTCCTAGGCCTGGAGAGCCTGGAGTATCTCCAG
GCC
GACTACAATTACATCAGTGCCATCGAGGCTGGGGCATTCAGCAAACTTAACAAGCTCAAAGTGCTCA
TC
CTGAATGACAACCTTCTGCTTTCACTGCCCAGCAATGTGTTCCGCTTTGTCCTGCTGACCCACTTAGA
C
CTCAGGGGGAATAGGCTAAAAGTAATGCCTTTTGCTGGCGTCCTTGAACATATTGGAGGGATCATGGAG
ATT
CAGCTGGAGGAAAATCCATGGAATTGCACTTGTGACTTACTTCCTCTCAAGGCCTGGCTAGACACCA
TA
ACTGTTTTTGTGGGAGAGATTGTCTGTGAGACTCCCTTTAGGTTGCATGGGAAAGACGTGACCCAGCT
G
ACCAGGCAAGACCTCTGTCCCAGAAAAAGTGCCAGTGATTCCAGTCAGAGGGGCAGCCATGCTGACACC
CAC
GTCCAAAGGCTGTCACCTACAATGAATCCTGCTCTCAACCCAACCAGGGCTCCGAAAGCCAGCCGGC
CG
CCCAAAATGAGAAATCGTCCAACTCCTCGAGTGACTGTGTCAAAGGACAGGCAAAGTTTTGGACCCAT
C
ATGGTGTACCAGACCAAGTCTCCTGTGCCTCTCACCTGTCCCAGCAGCTGTGTCTGCACCTCTCAGAGC
TCA
GACAATGGTCTGAATGTAAACTGCCAAGAAAGGAAGTTCACTAATATCTCTGACCTGCAGCCCAAAC
CG
ACCAGTCCAAAGAAACTCTACCTAACAGGGAACTATCTTCAAACTGTCTATAAGAATGACCTCTTAGA
A
TACAGTTCTTTGGACTTACTGCACTTAGGAAACAACAGGATTGCAGTCATTCAGGAAGGTGCCTTTACA
AAC
CTGACCAGTTTACGCAGACTTTATCTGAATGGCAATTACCTTGAAGTGCTGTACCCTTCTATGTTTG
AT
GGACTGCAGAGCTTGCAATATCTCTATTTAGAGTATAATGTCATTAAGGAAATTAAGCCTCTGACCTT
T
GATGCTTTGATTAACCTACAGCTACTGTTTCTGAACAACAACCTTCTTCGGTCCTTACCTGATAATATA
TTT
GGGGGGACGGCCCTAACCAGGCTGAATCTGAGAAACAACCATTTTTCTCACCTGCCCGTGAAAGGGG
TT
CTGGATCAGCTCCCGGCTTTCATCCAGATAGATCTGCAGGAGAACCCCTGGGACTGTACCTGTGACAT
C
ATGGGGCTGAAAGACTGGACAGAACATGCCAATTCCCCTGTCATCATTAATGAGGTGACTTGCGAATCT
CCT
GCTAAGCATGCAGGGGAGATACTAAAATTTCTGGGGAGGGAGGCTATCTGTCCAGACAGCCCAAACT
TG
TCAGATGGAACCGTCTTGTCAATGAATCACAATACAGACACACCTCGGTCGCTTAGTGTGTCTCCTAG
T
TCCTATCCTGAACTACACACTGAAGTTCCACTGTCTGTCTTAATTCTGGGATTGCTTGTTGTTTTCATC
TTA
TCTGTCTGTTTTGGGGCTGGTTTATTCGTCTTTGTCTTGAAACGCCGAAAGGGAGTGCCGAGCGTTC
CC
AGGAATACCAACAACTTAGACGTAAGCTCCTTTCAATTACAGTATGGGTCTTACAACACTGAGACTCA
C
GATAAAACAGACGGCCATGTCTACAACTATATCCCCCCACCTGTGGGTCAGATGTGCCAAAACCCCATC
TAC
ATGCAGAAGGAAGGAGACCCAGTAGCCTATTACCGAAACCTGCAAGAGTTCAGCTATAGCAACCTGG
AG
GAGAAAAAAGAAGAGCCAGCCACACCTGCTTACACAATAAGTGCCACTGAGCTGCTAGAAAAGCAGGC
C
ACACCAAGAGAGCCTGAGCTGCTGTATCAAAATATTGCTGAGCGAGTCAAGGAACTTCCCAGCGCAGGC
CTA
GTCCACTATAACTTTTGTACCTTACCTAAAAGGCAGTTTGCCCCTTCCTATGAATCTCGACGCCAAA
AC
CAAGACAGAATCAATAAAACCGTTTTATATGGAACTCCCAGGAAATGCTTTGTGGGGCAGTCAAAACC
C
AACCACCCTTTACTGCAAGCTAAGCCGCAATCAGAACCGGACTACCTCGAAGTTCTGGAAAAACAAACT
GCA
ATCAGTCAGCTGTGA


Translation (845 aa):
MLSGVWFLSVLTVAGILQTESRKTAKDICKIRCLCEEKENVLNINCENKGFTTVSLLQPPQYRIYQLFLN
G
NLLTRLYPNEFVNYSNAVTLHLGNNGLQEIRTGAFSGLKTLKRLHLNNNKLEILREDTFLGLESLEYLQ
A
DYNYISAIEAGAFSKLNKLKVLILNDNLLLSLPSNVFRFVLLTHLDLRGNRLKVMPFAGVLEHIGGIME
I
QLEENPWNCTCDLLPLKAWLDTITVFVGEIVCETPFRLHGKDVTQLTRQDLCPRKSASDSSQRGSHADT
H
VQRLSPTMNPALNPTRAPKASRPPKMRNRPTPRVTVSKDRQSFGPIMVYQTKSPVPLTCPSSCVCTSQS
S
DNGLNVNCQERKFTNISDLQPKPTSPKKLYLTGNYLQTVYKNDLLEYSSLDLLHLGNNRIAVIQEGAFT
N
LTSLRRLYLNGNYLEVLYPSMFDGLQSLQYLYLEYNVIKEIKPLTFDALINLQLLFLNNNLLRSLPDNI
F
GGTALTRLNLRNNHFSHLPVKGVLDQLPAFIQIDLQENPWDCTCDIMGLKDWTEHANSPVIINEVTCES
P
AKHAGEILKFLGREAICPDSPNLSDGTVLSMNHNTDTPRSLSVSPSSYPELHTEVPLSVLILGLLVVFI
L
SVCFGAGLFVFVLKRRKGVPSVPRNTNNLDVSSFQLQYGSYNTETHDKTDGHVYNYIPPPVGQMCQNPI
Y
MQKEGDPVAYYRNLQEFSYSNLEEKKEEPATPAYTISATELLEKQATPREPELLYQNIAERVKELPSAG
L
VHYNFCTLPKRQFAPSYESRRQNQDRINKTVLYGTPRKCFVGQSKPNHPLLQAKPQSEPDYLEVLEKQT
A
ISQL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser