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Report for CCDS14630.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14630.1 Public Homo sapiens X IGSF1 24 110 108 CCDS HistoryNCBI Gene:3547Re-query CCDS DB by CCDS ID:14630.1Re-query CCDS DB by GeneID:3547See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14630.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370900.5 ENSP00000359937.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370900.5Link to Ensembl Protein Viewer:ENSP00000359937.1Re-query CCDS DB by Nucleotide ID:ENST00000370900Re-query CCDS DB by Protein ID:ENSP00000359937
Original member Current member EBI ENST00000370901.4 ENSP00000359938.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370901.4Link to Ensembl Protein Viewer:ENSP00000359938.4Re-query CCDS DB by Nucleotide ID:ENST00000370901Re-query CCDS DB by Protein ID:ENSP00000359938
Original member Current member NCBI NM_001170963.2 NP_001164434.1 Accepted alive Link to Nucleotide Sequence:NM_001170963.2Link to Protein Sequence:NP_001164434.1Re-query CCDS DB by Nucleotide ID:NM_001170963Re-query CCDS DB by Protein ID:NP_001164434Link to BLAST:NP_001164434.1
Original member Current member NCBI NM_205833.4 NP_991402.1 Accepted alive Link to Nucleotide Sequence:NM_205833.4Link to Protein Sequence:NP_991402.1Re-query CCDS DB by Nucleotide ID:NM_205833Re-query CCDS DB by Protein ID:NP_991402Link to BLAST:NP_991402.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164434.1 242 Q8N6C5-3 242 100% 0 0
NP_991402.1 242 Q8N6C5-3 242 100% 0 0

Chromosomal Locations for CCDS 14630.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 131285117 131285466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131285767 131286048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131286437 131286463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131286605 131286674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (729 nt):
ATGACCCTGGACAGACCAGGGGAGGGGGCCACCATGCTGAAGACATTCACTGTTTTGCTCTTTTGCATTC
GGATGAGTCTGGGTATGACATCAATAGTGATGGACCCTCAACCAGAGTTGTGGATAGAGTCCAACTACCC
CCAGGCCCCTTGGGAGAACATCACGCTTTGGTGCCGAAGCCCCTCTCGGATATCAAGCAAGTTCCTGCTG
CTGAAGGATAAGACACAGATGACCTGGATCCGCCCTTCCCACAAGACCTTCCAAGTTTCATTCCTTATAG
GTGCCCTTACTGAGTCCAATGCAGGTCTTTACCGGTGCTGCTACTGGAAGGAGACAGGCTGGTCAAAGCC
CAGTAAAGTTCTAGAGTTGGAGGCACCAGGCCAACTGCCCAAGCCCATCTTCTGGATTCAGGCTGAGACC
CCCGCTCTTCCTGGGTGTAATGTTAACATCCTCTGCCATGGCTGGCTGCAGGATTTGGTATTCATGCTGT
TTAAAGAGGGATATGCAGAGCCTGTGGATTACCAAGTCCCAACTGGGACAATGGCCATATTCTCCATTGA
CAACCTGACACCTGAGGATGAAGGGGTTTACATCTGCCGCACTCATATCCAGATGCTCCCCACCCTGTGG
TCAGAGCCCAGCAACCCCCTGAAGCTGGTTGTAGCAGGTGGGTGTGGCTATGGCTGCTGGCATCTGGCAA
TTGTTGTCCCAGGTATCATGGCTGGCTGA

Translation (242 aa):
MTLDRPGEGATMLKTFTVLLFCIRMSLGMTSIVMDPQPELWIESNYPQAPWENITLWCRSPSRISSKFLL
LKDKTQMTWIRPSHKTFQVSFLIGALTESNAGLYRCCYWKETGWSKPSKVLELEAPGQLPKPIFWIQAET
PALPGCNVNILCHGWLQDLVFMLFKEGYAEPVDYQVPTGTMAIFSIDNLTPEDEGVYICRTHIQMLPTLW
SEPSNPLKLVVAGGCGYGCWHLAIVVPGIMAG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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