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Report for CCDS10154.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10154.1 Public Homo sapiens 15 DNAAF4 24 110 108 CCDS HistoryNCBI Gene:161582Re-query CCDS DB by CCDS ID:10154.1Re-query CCDS DB by GeneID:161582See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10154.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000348518.4 ENSP00000299561.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000348518.4Link to Ensembl Protein Viewer:ENSP00000299561.5Re-query CCDS DB by Nucleotide ID:ENST00000348518Re-query CCDS DB by Protein ID:ENSP00000299561
Original member Current member EBI ENST00000321149.7 ENSP00000323275.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000321149.7Link to Ensembl Protein Viewer:ENSP00000323275.3Re-query CCDS DB by Nucleotide ID:ENST00000321149Re-query CCDS DB by Protein ID:ENSP00000323275
Original member Current member NCBI NM_130810.4 NP_570722.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_130810.4Link to Protein Sequence:NP_570722.2Re-query CCDS DB by Nucleotide ID:NM_130810Re-query CCDS DB by Protein ID:NP_570722Link to BLAST:NP_570722.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_570722.2 420 Q8WXU2-1 420 100% 0 0

Chromosomal Locations for CCDS 10154.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 55430670 55430779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55432497 55432602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55434905 55435058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55439472 55439581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55450222 55450367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55466930 55467161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55491123 55491256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55497712 55497859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55498207 55498329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGCCTCTTCAGGTTAGCGATTACAGCTGGCAGCAGACGAAGACTGCGGTCTTTCTGTCTCTGCCCCTCA
AA
GGCGTGTGCGTCAGAGACACGGACGTGTTCTGCACGGAAAACTATCTGAAGGTCAACTTTCCTCCATT
T
TTATTTGAGGCATTTCTTTATGCTCCCATAGACGATGAGAGCAGCAAAGCAAAGATTGGGAATGACACC
ATT
GTCTTCACCTTGTATAAAAAAGAAGCGGCCATGTGGGAGACCCTTTCTGTGACGGGTGTTGACAAAG
AG
ATGATGCAAAGAATTAGAGAAAAATCTATTTTACAAGCACAAGAGAGAGCAAAAGAAGCTACAGAAGC
A
AAAGCTGCAGCAAAGCGGGAAGATCAAAAATACGCACTAAGTGTCATGATGAAGATTGAAGAAGAAGAG
AGG
AAAAAAATAGAAGATATGAAAGAAAATGAACGGATAAAAGCCACTAAAGCATTGGAAGCCTGGAAAG
AA
TATCAAAGAAAAGCTGAGGAGCAAAAAAAAATTCAGAGAGAAGAGAAATTATGTCAAAAAGAAAAGCA
A
ATTAAAGAAGAAAGAAAAAAAATAAAATATAAGAGTCTTACTAGAAATTTGGCATCTAGAAATCTTGCT
CCA
AAAGGGAGAAATTCAGAAAATATATTTACTGAGAAGTTAAAGGAAGACAGTATTCCTGCTCCTCGCT
CT
GTTGGCAGTATTAAAATCAACTTTACCCCTCGAGTATTCCCAACAGCTCTTCGTGAATCACAAGTAGC
A
GAAGAGGAGGAGTGGCTACACAAACAAGCTGAGGCACGAAGAGCAATGAATACTGACATAGCTGAACTT
TGC
GATTTAAAAGAAGAAGAAAAGAACCCAGAATGGTTGAAGGATAAAGGAAACAAATTGTTTGCAACGG
AA
AACTATTTGGCAGCTATCAATGCATATAATTTAGCCATAAGACTAAATAATAAGATGCCACTATTGTA
T
TTGAACCGGGCTGCTTGCCACCTAAAACTAAAAAACTTACACAAGGCTATTGAAGATTCTTCTAAGGCA
CTG
GAATTATTGATGCCACCTGTTACAGACAATGCTAATGCAAGAATGAAGGCACATGTACGACGTGGAA
CA
GCATTCTGTCAACTAGAATTGTATGTAGAAGGCCTACAGGATTATGAAGCGGCACTTAAGATTGATCC
A
TCCAACAAAATTGTACAAATTGATGCTGAGAAGATTCGGAATGTAATTCAAGGAACAGAACTAAAATCT
TAA


Translation (420 aa):
MPLQVSDYSWQQTKTAVFLSLPLKGVCVRDTDVFCTENYLKVNFPPFLFEAFLYAPIDDESSKAKIGNDT
I
VFTLYKKEAAMWETLSVTG
VDKEMMQRIREKSILQAQERAKEATEAKAAAKREDQKYALSVMMKIEEEE
R
KKIEDMKENERIKATKALEAWKEYQRKAEEQKKIQREEKLCQKEKQIKEERKKIKYKSLTRNLASRNLA
P
K
GRNSENIFTEKLKEDSIPAPRSVGSIKINFTPRVFPTALRESQVAEEEEWLHKQAEARRAMNTDIAEL
C
DLKEEEKNPEWLKDKG
NKLFATENYLAAINAYNLAIRLNNKMPLLYLNRAACHLKLKNLHKAIEDSSKA
L
ELLMPPVTDNANARMKAHVRRGTAFCQLELYVE
GLQDYEAALKIDPSNKIVQIDAEKIRNVIQGTELKS



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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