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Report for CCDS18152.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18152.1 Public Mus musculus 4 Nans 23 108 98 CCDS HistoryNCBI Gene:94181Re-query CCDS DB by CCDS ID:18152.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18152.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030018.4 ENSMUSP00000030018.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030018.4Link to Ensembl Protein Viewer:ENSMUSP00000030018.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000030018Re-query CCDS DB by Protein ID:ENSMUSP00000030018
Original member NCBI NM_053179.3 NP_444409.1 Updated not alive Link to Nucleotide Sequence:NM_053179.3Link to Protein Sequence:NP_444409.1Re-query CCDS DB by Nucleotide ID:NM_053179Re-query CCDS DB by Protein ID:NP_444409
Current member NCBI NM_053179.4 NP_444409.1 Accepted alive Link to Nucleotide Sequence:NM_053179.4Link to Protein Sequence:NP_444409.1Re-query CCDS DB by Nucleotide ID:NM_053179Re-query CCDS DB by Protein ID:NP_444409Link to BLAST:NP_444409.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444409.1 359 Q99J77 359 100% 0 0

Chromosomal Locations for CCDS 18152.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 46489359 46489490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46492706 46492921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46499043 46499142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46500066 46500220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46500713 46500979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46502435 46502644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGCCGCTGGAACTGGAGCTGTGTCCCGGGCGCTGGGTGGGTGGAAAGCACCCGTGCTTCATCATCGCGG
AGATCGGCCAGAACCACCAAGGAGACATAGATGTGGCCAAGCGCATGATCCGCACTGCCAAGGAGTGTGG
GGCCGACTGCGCTAAGTTTCAGAAGAGCGAGTTGGAGTTCAAGTTTAACCGGAAGGCCCTGGAGAGACCA
TATACTTCGAAGCATTCATGGGGGAAGACGTATGGGGAGCACAAGCGGCATCTGGAATTCAGCCACGACC
AGTACAAGGAGCTGCAGAGCTATGCGCAGGAGATCGGCATCTTCTTCACTGCCTCTGGCATGGACGAGAT
GGCAGTTGAGTTTCTGCACGAACTGAATGTTCCCTTTTTCAAAGTTGGATCTGGGGACACTAACAATTTT
CCCTACCTGGAAAAGACAGCCAAGAAAGGTCGTCCTATGGTGATCTCCAGCGGGATGCAGTCAATGGACA
CCATGAAGCAAGTCTATCAGATCGTGAAGCCGCTGAATCCCAACTTCTGCTTCCTCCAATGCACCAGCGC
GTACCCACTACAGCCCGAGGATGCCAACCTGCGCGTCATCTCGGAATACCAGAAGCTCTTTCCCGACATT
CCCATCGGGTATTCCGGGCACGAGACGGGCATCGCCATATCTGTGGCCGCCGTGGCTCTGGGGGCCAAGG
TGTTGGAACGTCACATAACGTTGGACAAGACCTGGAAGGGGAGTGACCACTCAGCCTCGCTGGAGCCTGG
GGAGCTGGCAGAGCTGGTGCGGTCTGTGCGCCTGGTGGAGCGGGCCCTGGGCTCCCCAACCAAGCAGCTG
CTGCCCTGTGAGATGGCCTGCAATGAGAAGCTCGGCAAGTCTGTGGTAGCCAAAGTGAAAATCCCAGCAG
GCACCACCCTGACCCTGGACATGCTCACTGTGAAGGTGGGGGAGCCCAAAGGCTATCCTCCTGAAGACAT
CTTCAACCTAGCGGGCAAAAAGGTGCTGGTCACTATCGAAGAAGATGACACGGTCATGGAAGAATCCGTG
GAAAGTCACAGCAAGAAAATCAAGGCTTAA

Translation (359 aa):
MPLELELCPGRWVGGKHPCFIIAEIGQNHQGDIDVAKRMIRTAKECGADCAKFQKSELEFKFNRKALERP
YTSKHSWGKTYGEHKRHLEFSHDQYKELQSYAQEIGIFFTASGMDEMAVEFLHELNVPFFKVGSGDTNNF
PYLEKTAKKGRPMVISSGMQSMDTMKQVYQIVKPLNPNFCFLQCTSAYPLQPEDANLRVISEYQKLFPDI
PIGYSGHETGIAISVAAVALGAKVLERHITLDKTWKGSDHSASLEPGELAELVRSVRLVERALGSPTKQL
LPCEMACNEKLGKSVVAKVKIPAGTTLTLDMLTVKVGEPKGYPPEDIFNLAGKKVLVTIEEDDTVMEESV
ESHSKKIKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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