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Report for CCDS25382.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25382.1 Public Mus musculus 11 Krt23 23 108 98 CCDS HistoryNCBI Gene:94179Re-query CCDS DB by CCDS ID:25382.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25382.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006969.7 ENSMUSP00000006969.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006969.7Link to Ensembl Protein Viewer:ENSMUSP00000006969.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000006969Re-query CCDS DB by Protein ID:ENSMUSP00000006969
Original member Current member NCBI NM_033373.2 NP_203537.1 Accepted alive Link to Nucleotide Sequence:NM_033373.2Link to Protein Sequence:NP_203537.1Re-query CCDS DB by Nucleotide ID:NM_033373Re-query CCDS DB by Protein ID:NP_203537Link to BLAST:NP_203537.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_203537.1 422 Q99PS0 422 100% 0 0

Chromosomal Locations for CCDS 25382.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 99478197 99478291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99480044 99480075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99480882 99481102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99483745 99483867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99483952 99484113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99485693 99485849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99486700 99486782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99492669 99493064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1269 nt):
ATGAACTCCAGCCACAGCTTTAACCAGACCTACTCGGCCTCTGTCCACAGCCTCGGAAGCACCCGGGGGC
GGCAGGGGAGCTGCCATCGGGCACCGAGTGTCCATGGAGGCGCAGGGGGTGTCCGCATCTCCCTTTCCTT
CACCACGCCAGGCTGCCTGCCTCCTGGAGGATCATGGGGGTCTGGAAGAAGCAGTCCCCTGCTAGGTGGC
AATGGCAAGGCCACCATGCAGAATCTCAACGATCGCCTGGCCACATATCTGGAGAAGGTGCGGGCTCTAG
AGGAGGCTAACTCGAAGCTGGAAACCCGTATACTAAGGTGGCATCAGGAGAGAGAACCCAGCCACAGAAA
GGATTATTCCCAGTATGAGGAAAACATCAGCCGCCTGCAGGAGCAGATAGTGGACGGTAAGATGGCCAAT
GCCCACATTGTCGTGCTCATTGACAACGCCAGGATGGCAGTGGATGACTTCAACCTGAAGTTTGAAAACG
AACACTCGTTAAAGAAAGACTTGGAAATTGAAGTTGAGGGCCTCCGAAAGACCTTGGATGATCTGACCAT
TGTCACAACAGACCTGGAACAGGAGGTGGAGGGGATGAGGAAAGAGCTGATCCTCATGAAGAAACGCCAT
GAGCAGGAAATGGAGGAGAATCACTTGCCGAGTGACTTCAAGGTCAGTGTGAAGGTGGACACTACTCCAG
GGGAAGATCTGATTAAGGTCTTGGAAGATATGAGGCAGGAATACGAGTTAATAATAAAGAAGAAACATCA
AGAGTTGGACACCTGGTTCAGAGAGCAGTCAGCCGCCATGGCCCAGGAAGTGGCCAGTCCAGCGCCTGTA
CAGGGCAACCAAAGTGATATCCATGAGCTGAGGAGAACATTCCAGGCCCTAGAGATTGACCTGCAGGCCC
AGCACAGCAGGAAAACCGCTTTGGAAAACATGCTGACAGAGACCCGGGCTCGATACTCCTGCCGTCTCCA
GGACATGCAGCAGATCATCTCCCACTACGAAGAAGAGCTGATTCAGCTCCGCCAAGACCTGGAGCGTCAG
AACAATGAACACAAGGTGCTGCTGGGCATCAAAACCCACCTGGAGAAGGAAATCGCCACCTACCGCCGGC
TCCTGGAGGGAGACACTGAAGGGACGATGGATGGATCTGAGTCAAGGCTGAAAGGATCTGAAGCTTCAAC
GATCAAGGCCATCACTCAAGAGAGTGTCAATGGAAGAATCGTTCTTTCTCAAGTGAATGAGATCCAAAAG
CATATATGA

Translation (422 aa):
MNSSHSFNQTYSASVHSLGSTRGRQGSCHRAPSVHGGAGGVRISLSFTTPGCLPPGGSWGSGRSSPLLGG
NGKATMQNLNDRLATYLEKVRALEEANSKLETRILRWHQEREPSHRKDYSQYEENISRLQEQIVDGKMAN
AHIVVLIDNARMAVDDFNLKFENEHSLKKDLEIEVEGLRKTLDDLTIVTTDLEQEVEGMRKELILMKKRH
EQEMEENHLPSDFKVSVKVDTTPGEDLIKVLEDMRQEYELIIKKKHQELDTWFREQSAAMAQEVASPAPV
QGNQSDIHELRRTFQALEIDLQAQHSRKTALENMLTETRARYSCRLQDMQQIISHYEEELIQLRQDLERQ
NNEHKVLLGIKTHLEKEIATYRRLLEGDTEGTMDGSESRLKGSEASTIKAITQESVNGRIVLSQVNEIQK
HI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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