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Report for CCDS14472.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14472.1 Public Homo sapiens X SYTL4 24 110 108 CCDS HistoryNCBI Gene:94121Re-query CCDS DB by CCDS ID:14472.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14472.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263033.9 ENSP00000263033.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000263033.9Link to Ensembl Protein Viewer:ENSP00000263033.5Re-query CCDS DB by Nucleotide ID:ENST00000263033Re-query CCDS DB by Protein ID:ENSP00000263033
Original member Current member EBI ENST00000276141.10 ENSP00000276141.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000276141.10Link to Ensembl Protein Viewer:ENSP00000276141.6Re-query CCDS DB by Nucleotide ID:ENST00000276141Re-query CCDS DB by Protein ID:ENSP00000276141
Original member Current member EBI ENST00000372989.6 ENSP00000362080.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372989.6Link to Ensembl Protein Viewer:ENSP00000362080.1Re-query CCDS DB by Nucleotide ID:ENST00000372989Re-query CCDS DB by Protein ID:ENSP00000362080
Original member Current member EBI ENST00000685623.1 ENSP00000509693.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000685623.1Link to Ensembl Protein Viewer:ENSP00000509693.1Re-query CCDS DB by Nucleotide ID:ENST00000685623Re-query CCDS DB by Protein ID:ENSP00000509693
Original member Current member NCBI NM_001129896.3 NP_001123368.1 Accepted alive Link to Nucleotide Sequence:NM_001129896.3Link to Protein Sequence:NP_001123368.1Re-query CCDS DB by Nucleotide ID:NM_001129896Re-query CCDS DB by Protein ID:NP_001123368Link to BLAST:NP_001123368.1
Original member Current member NCBI NM_001174068.2 NP_001167539.1 Accepted alive Link to Nucleotide Sequence:NM_001174068.2Link to Protein Sequence:NP_001167539.1Re-query CCDS DB by Nucleotide ID:NM_001174068Re-query CCDS DB by Protein ID:NP_001167539Link to BLAST:NP_001167539.1
Original member Current member NCBI NM_001370160.1 NP_001357089.1 Accepted alive Link to Nucleotide Sequence:NM_001370160.1Link to Protein Sequence:NP_001357089.1Re-query CCDS DB by Nucleotide ID:NM_001370160Re-query CCDS DB by Protein ID:NP_001357089Link to BLAST:NP_001357089.1
Original member Current member NCBI NM_001370161.1 NP_001357090.1 Accepted alive Link to Nucleotide Sequence:NM_001370161.1Link to Protein Sequence:NP_001357090.1Re-query CCDS DB by Nucleotide ID:NM_001370161Re-query CCDS DB by Protein ID:NP_001357090Link to BLAST:NP_001357090.1
Original member Current member NCBI NM_001370163.1 NP_001357092.1 Accepted alive Link to Nucleotide Sequence:NM_001370163.1Link to Protein Sequence:NP_001357092.1Re-query CCDS DB by Nucleotide ID:NM_001370163Re-query CCDS DB by Protein ID:NP_001357092Link to BLAST:NP_001357092.1
Original member Current member NCBI NM_001370164.1 NP_001357093.1 Accepted alive Link to Nucleotide Sequence:NM_001370164.1Link to Protein Sequence:NP_001357093.1Re-query CCDS DB by Nucleotide ID:NM_001370164Re-query CCDS DB by Protein ID:NP_001357093Link to BLAST:NP_001357093.1
Original member Current member NCBI NM_001370165.1 NP_001357094.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001370165.1Link to Protein Sequence:NP_001357094.1Re-query CCDS DB by Nucleotide ID:NM_001370165Re-query CCDS DB by Protein ID:NP_001357094Link to BLAST:NP_001357094.1
Original member Current member NCBI NM_001370166.1 NP_001357095.1 Accepted alive Link to Nucleotide Sequence:NM_001370166.1Link to Protein Sequence:NP_001357095.1Re-query CCDS DB by Nucleotide ID:NM_001370166Re-query CCDS DB by Protein ID:NP_001357095Link to BLAST:NP_001357095.1
Original member Current member NCBI NM_001370167.1 NP_001357096.1 Accepted alive Link to Nucleotide Sequence:NM_001370167.1Link to Protein Sequence:NP_001357096.1Re-query CCDS DB by Nucleotide ID:NM_001370167Re-query CCDS DB by Protein ID:NP_001357096Link to BLAST:NP_001357096.1
Original member Current member NCBI NM_001370168.1 NP_001357097.1 Accepted alive Link to Nucleotide Sequence:NM_001370168.1Link to Protein Sequence:NP_001357097.1Re-query CCDS DB by Nucleotide ID:NM_001370168Re-query CCDS DB by Protein ID:NP_001357097Link to BLAST:NP_001357097.1
Original member Current member NCBI NM_001370169.1 NP_001357098.1 Accepted alive Link to Nucleotide Sequence:NM_001370169.1Link to Protein Sequence:NP_001357098.1Re-query CCDS DB by Nucleotide ID:NM_001370169Re-query CCDS DB by Protein ID:NP_001357098Link to BLAST:NP_001357098.1
Original member Current member NCBI NM_080737.3 NP_542775.2 Accepted alive Link to Nucleotide Sequence:NM_080737.3Link to Protein Sequence:NP_542775.2Re-query CCDS DB by Nucleotide ID:NM_080737Re-query CCDS DB by Protein ID:NP_542775Link to BLAST:NP_542775.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123368.1 671 Q96C24-1 671 100% 0 0
NP_001167539.1 671 Q96C24-1 671 100% 0 0
NP_001357089.1 671 Q96C24-1 671 100% 0 0
NP_001357090.1 671 Q96C24-1 671 100% 0 0
NP_001357092.1 671 Q96C24-1 671 100% 0 0
NP_001357093.1 671 Q96C24-1 671 100% 0 0
NP_001357094.1 671 Q96C24-1 671 100% 0 0
NP_001357095.1 671 Q96C24-1 671 100% 0 0
NP_001357096.1 671 Q96C24-1 671 100% 0 0
NP_001357097.1 671 Q96C24-1 671 100% 0 0
NP_001357098.1 671 Q96C24-1 671 100% 0 0
NP_542775.2 671 Q96C24-1 671 100% 0 0

Chromosomal Locations for CCDS 14472.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 100676028 100676176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100678391 100678599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100679313 100679412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100681227 100681335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100685990 100686151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100686679 100686781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100687067 100687245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100688351 100688443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100689856 100689959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100690075 100690165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100690563 100690638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100691108 100691209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100700897 100700999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100701220 100701329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100701458 100701673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100701928 100702037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2016 nt):
ATGTCGGAGTTACTGGACCTTTCTTTTCTGTCTGAGGAGGAAAAGGATTTGATTCTCAGTGTTCTACAGC
GAGATGAAGAGGTCCGGAAAGCAGATGAGAAAAGGATTAGGCGACTAAAGAATGAGTTACTGGAGATAAA
AAGGAAAGGGGCCAAGAGGGGCAGCCAACACTACAGTGATCGGACCTGTGCCCGGTGCCAGGAGAGCCTG
GGCCGTTTGAGTCCCAAAACCAATACTTGTCGGGGTTGTAATCACCTGGTGTGTCGGGACTGCCGCATAC
AGGAAAGCAATGGTACCTGGAGGTGCAAGGTGTGCGCCAAGGAAATAGAGTTGAAGAAAGCAACTGGGGA
CTGGTTTTATGACCAGAAAGTGAATCGCTTTGCTTACCGCACAGGTAGTGAGATAATCAGGATGTCCCTG
CGCCACAAACCTGCAGTGAGTAAAAGAGAGACAGTGGGACAGTCCCTCCTTCATCAGACACAGATGGGTG
ACATCTGGCCAGGAAGAAAGATCATTCAGGAGCGGCAGAAGGAGCCCAGTGTGCTATTTGAAGTGCCAAA
GCTGAAAAGTGGAAAGAGTGCATTGGAAGCTGAGAGTGAGAGTCTGGATAGCTTCACAGCTGACTCGGAT
AGCACCTCCAGGAGAGACTCTCTGGATAAATCTGGCCTCTTTCCAGAATGGAAGAAGATGTCTGCTCCCA
AATCTCAAGTAGAAAAGGAAACTCAGCCTGGAGGTCAAAATGTGGTATTTGTGGATGAGGGTGAGATGAT
ATTTAAGAAGAACACCAGAAAAATCCTCAGGCCTTCAGAGTACACTAAATCTGTGATAGATCTTCGCCCA
GAAGATGTGGTACATGAAAGTGGCTCCTTGGGAGACAGAAGCAAATCCGTCCCAGGCCTCAATGTGGATA
TGGAAGAGGAAGAAGAAGAAGAAGACATTGACCACCTAGTGAAGTTACATCGCCAGAAGCTAGCCAGAAG
CAGCATGCAAAGTGGCTCCTCCATGAGTACGATCGGCAGCATGATGAGCATCTACAGTGAAGCTGGTGAT
TTCGGGAACATCTTTGTGACTGGCAGGATTGCCTTTTCCCTGAAGTATGAGCAGCAAACCCAGAGTCTGG
TTGTCCATGTGAAGGAGTGCCATCAGCTGGCCTATGCTGATGAAGCCAAGAAGCGCTCTAACCCATATGT
GAAGACTTACCTTCTGCCTGACAAGTCCCGCCAAGGAAAAAGAAAAACCAGCATCAAGCGGGACACTATT
AATCCACTATATGATGAGACGCTGAGGTATGAGATCCCAGAATCTCTCCTGGCCCAGAGGACCCTGCAGT
TCTCAGTTTGGCATCATGGTCGTTTTGGCAGAAACACTTTCCTTGGAGAGGCAGAGATCCAGATGGATTC
CTGGAAGCTTGATAAGAAACTGGATCATTGCCTCCCTTTACATGGAAAGATCAGTGCTGAGTCCCCGACT
GGCTTGCCATCACACAAAGGCGAGTTGGTGGTTTCATTGAAATACATCCCAGCCTCCAAAACCCCTGTTG
GAGGTGACCGGAAAAAGAGTAAAGGTGGGGAAGGGGGAGAGCTCCAGGTGTGGATCAAAGAAGCCAAGAA
CTTGACGGCTGCCAAAGCAGGAGGGACTTCAGACAGCTTTGTCAAGGGATACCTCCTTCCCATGAGGAAC
AAGGCCAGTAAACGTAAAACTCCTGTGATGAAGAAGACCCTGAATCCTCACTACAACCATACATTTGTCT
ACAATGGTGTGAGGCTGGAAGATCTACAGCATATGTGCCTGGAACTGACTGTGTGGGACCGGGAGCCCCT
GGCCAGCAATGACTTCCTGGGAGGGGTCAGGCTGGGTGTTGGCACTGGGATCAGTAATGGGGAAGTGGTG
GACTGGATGGACTCGACTGGGGAAGAAGTGAGCCTGTGGCAGAAGATGCGACAGTACCCAGGGTCTTGGG
CAGAAGGGACTCTGCAGCTCCGTTCCTCAATGGCCAAGCAGAAGCTGGGTTTATGA

Translation (671 aa):
MSELLDLSFLSEEEKDLILSVLQRDEEVRKADEKRIRRLKNELLEIKRKGAKRGSQHYSDRTCARCQESL
GRLSPKTNTCRGCNHLVCRDCRIQESNGTWRCKVCAKEIELKKATGDWFYDQKVNRFAYRTGSEIIRMSL
RHKPAVSKRETVGQSLLHQTQMGDIWPGRKIIQERQKEPSVLFEVPKLKSGKSALEAESESLDSFTADSD
STSRRDSLDKSGLFPEWKKMSAPKSQVEKETQPGGQNVVFVDEGEMIFKKNTRKILRPSEYTKSVIDLRP
EDVVHESGSLGDRSKSVPGLNVDMEEEEEEEDIDHLVKLHRQKLARSSMQSGSSMSTIGSMMSIYSEAGD
FGNIFVTGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTI
NPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISAESPT
GLPSHKGELVVSLKYIPASKTPVGGDRKKSKGGEGGELQVWIKEAKNLTAAKAGGTSDSFVKGYLLPMRN
KASKRKTPVMKKTLNPHYNHTFVYNGVRLEDLQHMCLELTVWDREPLASNDFLGGVRLGVGTGISNGEVV
DWMDSTGEEVSLWQKMRQYPGSWAEGTLQLRSSMAKQKLGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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