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Report for CCDS11998.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11998.1 Public Homo sapiens 18 SOCS6 24 110 108 CCDS HistoryNCBI Gene:9306Re-query CCDS DB by CCDS ID:11998.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11998.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397942.4 ENSP00000381034.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397942.4Link to Ensembl Protein Viewer:ENSP00000381034.3Re-query CCDS DB by Nucleotide ID:ENST00000397942Re-query CCDS DB by Protein ID:ENSP00000381034
Original member Current member EBI ENST00000582322.1 ENSP00000463395.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000582322.1Link to Ensembl Protein Viewer:ENSP00000463395.1Re-query CCDS DB by Nucleotide ID:ENST00000582322Re-query CCDS DB by Protein ID:ENSP00000463395
Original member Current member NCBI NM_004232.4 NP_004223.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004232.4Link to Protein Sequence:NP_004223.2Re-query CCDS DB by Nucleotide ID:NM_004232Re-query CCDS DB by Protein ID:NP_004223Link to BLAST:NP_004223.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004223.2 535 O14544 535 100% 0 0

Chromosomal Locations for CCDS 11998.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 70324669 70326276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1608 nt):
ATGAAGAAAATTAGTCTTAAAACCTTACGGAAATCTTTTAACTTGAATAAAAGTAAAGAAGAAACTGATT
TCATGGTAGTACAACAACCATCGCTAGCCAGTGACTTTGGAAAAGATGATTCCTTATTTGGTAGCTGCTA
TGGTAAAGATATGGCCAGCTGCGATATCAACGGTGAAGATGAAAAAGGCGGAAAAAACAGATCAAAAAGC
GAGAGCCTGATGGGTACGCTAAAAAGGCGGCTTTCTGCAAAACAGAAGTCAAAAGGCAAGGCGGGCACAC
CCTCTGGGAGCTCTGCCGACGAGGACACCTTCTCCTCCTCCTCAGCACCCATAGTCTTTAAAGACGTGAG
AGCTCAGAGGCCGATAAGGTCCACGTCGCTCCGCAGCCATCACTACAGTCCCGCGCCGTGGCCTCTGCGG
CCCACAAACTCCGAGGAGACCTGCATCAAGATGGAGGTGAGAGTCAAGGCCTTGGTTCACTCTTCCAGCC
CGAGTCCAGCCCTGAATGGCGTCCGGAAGGATTTCCACGACCTCCAGTCTGAGACCACGTGCCAGGAGCA
AGCCAATTCACTGAAGAGCTCGGCTTCTCATAATGGAGACCTGCATCTTCACCTGGATGAACATGTGCCT
GTCGTTATTGGACTTATGCCTCAGGACTACATTCAGTATACTGTGCCTTTAGATGAGGGGATGTATCCTT
TGGAAGGATCACGGAGCTATTGTCTGGACAGCTCTTCTCCCATGGAAGTCTCTGCGGTTCCTCCTCAAGT
GGGAGGGCGCGCTTTCCCCGAGGATGAGAGTCAGGTAGACCAGGACCTAGTTGTCGCCCCAGAGATCTTC
GTGGATCAGTCCGTGAATGGCTTGTTGATTGGCACCACGGGAGTCATGTTGCAGAGCCCGAGAGCGGGTC
ACGATGATGTCCCTCCACTCTCACCATTGCTACCTCCAATGCAGAATAATCAAATCCAAAGGAACTTCAG
TGGACTCACTGGCACAGAAGCCCACGTGGCTGAAAGTATGCGCTGTCATTTGAATTTTGATCCGAACTCT
GCTCCTGGGGTTGCAAGAGTTTATGACTCAGTGCAAAGTAGTGGTCCCATGGTTGTGACAAGCCTTACAG
AGGAGCTGAAAAAACTTGCAAAGCAAGGATGGTACTGGGGACCAATCACACGTTGGGAGGCAGAAGGGAA
GCTAGCAAACGTGCCAGATGGTTCTTTTCTTGTTCGGGACAGTTCTGACGACCGTTACCTTTTAAGCTTG
AGCTTTCGCTCCCATGGTAAAACACTTCACACTAGAATTGAGCACTCAAATGGTAGGTTTAGCTTTTATG
AACAGCCAGATGTGGAAGGACATACGTCCATAGTTGATCTAATTGAGCATTCAATCAGGGACTCTGAAAA
TGGAGCTTTTTGTTATTCAAGGTCTCGGCTGCCTGGATCTGCAACTTACCCCGTCAGACTGACCAACCCA
GTGTCCCGGTTCATGCAGGTGCGCTCGTTGCAGTACCTGTGTCGTTTTGTTATACGTCAGTATACCAGAA
TAGACTTAATTCAGAAACTGCCTTTGCCAAACAAAATGAAGGATTATTTACAGGAGAAGCACTACTGA

Translation (535 aa):
MKKISLKTLRKSFNLNKSKEETDFMVVQQPSLASDFGKDDSLFGSCYGKDMASCDINGEDEKGGKNRSKS
ESLMGTLKRRLSAKQKSKGKAGTPSGSSADEDTFSSSSAPIVFKDVRAQRPIRSTSLRSHHYSPAPWPLR
PTNSEETCIKMEVRVKALVHSSSPSPALNGVRKDFHDLQSETTCQEQANSLKSSASHNGDLHLHLDEHVP
VVIGLMPQDYIQYTVPLDEGMYPLEGSRSYCLDSSSPMEVSAVPPQVGGRAFPEDESQVDQDLVVAPEIF
VDQSVNGLLIGTTGVMLQSPRAGHDDVPPLSPLLPPMQNNQIQRNFSGLTGTEAHVAESMRCHLNFDPNS
APGVARVYDSVQSSGPMVVTSLTEELKKLAKQGWYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSL
SFRSHGKTLHTRIEHSNGRFSFYEQPDVEGHTSIVDLIEHSIRDSENGAFCYSRSRLPGSATYPVRLTNP
VSRFMQVRSLQYLCRFVIRQYTRIDLIQKLPLPNKMKDYLQEKHY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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