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Report for CCDS35544.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35544.1 Public Mus musculus 1 Eif5b 23 108 98 CCDS HistoryNCBI Gene:226982Re-query CCDS DB by CCDS ID:35544.1Re-query CCDS DB by GeneID:226982See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35544.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027252.7 ENSMUSP00000027252.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027252.7Link to Ensembl Protein Viewer:ENSMUSP00000027252.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027252Re-query CCDS DB by Protein ID:ENSMUSP00000027252
Original member Current member NCBI NM_198303.2 NP_938045.2 Accepted alive Link to Nucleotide Sequence:NM_198303.2Link to Protein Sequence:NP_938045.2Re-query CCDS DB by Nucleotide ID:NM_198303Re-query CCDS DB by Protein ID:NP_938045Link to BLAST:NP_938045.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_938045.2 1216 Q05D44 1216 100% 0 0

Chromosomal Locations for CCDS 35544.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 37998290 37998324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38017806 38017931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38018025 38018109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38018865 38019534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38021594 38021811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38022164 38022314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38032277 38032375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38033068 38033157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38034029 38034103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38035993 38036273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38037203 38037310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38037547 38037657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38040673 38040740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38041697 38041838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38044704 38044835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38045324 38045506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38045648 38045809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38046612 38046743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38048793 38048924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38049017 38049093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38049176 38049340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38050187 38050325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38051123 38051284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38051606 38051713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3651 nt):
ATGGGGAAGAAACAGAAAAACAAGAGCGAAGACAGTACCAAGGATGATACTGATTTGGGCGCCTTGGCTG
CAGAAATAGAAGGAGCTGGTGCTGCCAAGGAGCAGGAGCCTCAGAAGTCAAAGGGAAAGAAGAAAAAGGA
GAAAAAGAAACAAGACTTTGATGAGAACGACATTCTGAGAGAGCTGGAGGAGTTGTCTCTGGAAGCCCAA
GGCATCAGAGCTGACAGAGACGCCGCTGCAGTCAAGCCTACAGAAAACAATGAAGAAGAATCTGCCTCAA
AACAAGATAAAAAGAAGAAGGGACAAAAAGGCAAGAAAACAAGTTTTGATGAGAATGATAGTGAAGAATT
GGAAGATAAAGATTCAAAGTCAAAAAAGACTGCCAGACCTAACTCAGAGGCACCCCTTTCTGGGAGTGAG
GATGCTGATGATTCTAATAAACTTTCTAAAAAAGGTAAAAAAGCCCAGAAATCCACGAAAAAACGGGACG
GGTCAGAAGAGGATGAAGACAATAGCAAAAGAAGTAAAGAACGTTCGAGAGTAAACTCCTCTGGTGAAAG
TGGTGGTGAGTCCGATGAATTTTTGCAGTCCAGAAAAGGACAGAAAAAAAATCAGAAGAACAAGTCCGTT
CCTACCGTAGACAGTGGGAATGAGGACGATGACTCTTCCTTCAAAATTAAGACGGTGGCCCAGAAGAAGG
CAGAAAAGAAAGAGCGCGAGAAGAAAAAGAGAGATGAAGAGAAAGCGAAGTTGCGGAAGATGAAGGAGAA
AGAAGAGCTAGAGAAGGGCAAGAAGGAGCAGAGTAAACAGAGGGAGCCTCAGAAGAGACCTGAGGAGGAG
GTGTTGACACTCAGAGGGACTCCTGACACAGGAGCTGCCTCGGAAGAGAAAGGAGACACTGCTGCAGCTC
TGGAAGACGACAATGAAGGAGACAAAAAGAAAAAAGATAAGAAGAAAAAGAAAACAGAGAAAGATGAGAA
AGAAAAAGAGAAGAAGAAAGGCCCTAGTAAATCTACTGTTAAAGCTATCCAGGAAGCTTTGGCTAAGCTC
AAAGAGGAGGAGGAGAGACAGAAGAGAGAGGAGGAAGAAAGGATTAAGCGGCTTGAGGAGCTTGAAGCCA
AACGAAAAGAAGAGGAACGATTAGAACAAGAAAAAAGAGAAAGGAAAAAGCAAAAAGAAAAAGAAAGAAA
AGAACGGTTAAAAAAAGAAGGAAAGCTGTTAACTAAGTCCCAGAGAGAAGCCAGAGCCAGAGCCGAAGTG
ACCCTTAGACACCTCCAAGCTCAGGGTGTTGAAGTGCCATCAAAAGACTCGTTGCCAAAGAAAAGGCCAG
TTTATGAAGATAAGAAGAAGAAGAAAACACCACAGCAGCTAGAGAGTAAAGAAGTATCTGAAACTTTGGA
AATAAGTGCTCCTGTGGAAGCTGTGGACCAAGGAGGACCAGAAAAGGAAGAGACGCCACCTTCTGTTGAG
CCAGAGGAAGAGGAAGACACCGAAGATGCTGGCTTAGATGACTGGGAGGCTATGGCCAGTGATGAGGAGA
GAGAAAAAGAAGGAAATATGATTCACATAGAAGTAGAAGAAAACCCTGAGGAAGAAGAAGAGGAAGAAGA
AGAGGAGGAGGAAGAAGAGAGTGAAGATGAAGAAGAGGAAGGGGACAGTGAAGGCAGCGATGGGGACGAG
GAGGACTGCAAGCTGTCGGATGAGAAGGACTCAGGGAAGGCTGGAGACACGAAGCCCAGCAAAGACGCTA
GCTCAGACTCCGAGTACGACTCCGACGACGATCGGACTAAAGAAGAGCGGGCGTACGACAAAGCGAAACG
GAGGATTGAGAAACGACGACTTGAACATGGTAAAAATGTAAATACAGAAAAGCTGAGAGCCCCTATCATC
TGTGTGCTTGGACATGTAGACACAGGAAAGACAAAAATTCTAGATAAGCTCCGTCACACACATGTGCAAG
ATGGCGAAGCAGGTGGTATTACACAGCAGATTGGTGCCACAAATGTTCCTCTTGAAGCTATTAATGAACA
AACTAAGATGATTAAAAATTTTGACAGAGAGAATGTCCGAATCCCAGGGATGCTGATTATTGATACTCCT
GGACACGAGTCTTTCAGTAACCTGAGAAACAGAGGAAGCTCTCTTTGTGACATTGCCATTTTAGTTGTTG
ACATTATGCATGGTTTAGAGCCCCAGACAATTGAATCAATCAACATTCTCAAATCTAAAAAGTGCCCCTT
CATTGTTGCACTTAATAAGATTGACAGGTTATATGATTGGAAGAAGAGTCCTGATTCTGATGTGGCTGTT
ACTTTAAAAAAGCAGAAGAAGAATACAAAGGATGAATTTGAGGAGCGTGCAAAGGCCATTATTGTAGAAT
TTGCACAGCAGGGTTTGAATGCTGCTTTGTTTTATGAGAATAAAGATCCCCGCACTTTCGTGTCCTTGGT
ACCTACCTCTGCACATACTGGTGATGGCATGGGAAGTCTCATCTACCTTCTTGTGGAGTTAACTCAAACC
ATGTTGAGCAAGAGGCTTGCACACTGTGAAGAGCTGAGAGCACAAGTCATGGAGGTTAAAGCTCTCCCAG
GAATGGGCACCACAATAGATGTCATATTGATCAATGGACGTTTGAAGGAAGGGGATACAATCATTGTCCC
TGGAGTAGAAGGGCCCATTGTCACTCAGATTCGAGGCCTCCTTTTACCTCCTCCTATGAAGGAATTACGT
GTGAAGAACCAATATGAAAAGCATAAAGAAGTGGAAGCGGCCCAGGGAGTAAAGATTCTTGGGAAAGACC
TTGAAAAAACCCTGGCTGGCTTACCTCTCCTAGTGGCCTACAAGGATGATGAAATCCCAGTTCTCAAAGA
TGAATTGATCCATGAGTTAAAGCAGACACTAAATGCTATCAAACTAGAAGAAAAAGGAGTTTATGTCCAG
GCATCTACACTGGGCTCTTTGGAAGCTCTTCTTGAATTTCTGAAAACATCAGAGGTGCCATATGCAGGAA
TTAACATTGGCCCAGTCCATAAAAAGGACGTTATGAAGGCTTCAGTGATGTTGGAACATGATCCCCAGTA
TGCAGTAATTTTGGCCTTTGATGTAAGAATTGAACGGGACGCACAAGAGATGGCTGATAGTTTGGGAGTT
AGAATCTTTAGTGCAGAAATTATTTATCACTTATTTGATGCCTTTACAAAATACAGACAGGACTACAAAA
AACAAAAACAAGAAGAATTTAAGCACATAGCAGTATTTCCCTGCAAGATGAAAATCCTCCCTCAATACAT
TTTCAATTCTCGAGATCCAATAGTAATAGGGGTCACTGTGGAGGCTGGTCAAGTGAAACAAGGAACACCT
ATGTGCGTTCCAAGCAAAAATTTTGTTGACATTGGGATAGTAACAAGCATTGAAATAAACCACAAGCAGG
TGGATGTTGCAAAAAAAGGACAAGAGGTCTGTGTCAAAATAGAACCTATCCCTGGGGAATCTCCCAAAAT
GTTTGGGAGACATTTTGAAGCTACAGATATACTTGTCAGCAAGATCAGCCGGCAGTCCATCGATGCACTC
AAAGACTGGTTCAGAGACGAAATGCAGAAGAGTGACTGGCAGCTTATTGTGGAGCTGAAGAAAGTATTTG
AAATCATCTAA

Translation (1216 aa):
MGKKQKNKSEDSTKDDTDLGALAAEIEGAGAAKEQEPQKSKGKKKKEKKKQDFDENDILRELEELSLEAQ
GIRADRDAAAVKPTENNEEESASKQDKKKKGQKGKKTSFDENDSEELEDKDSKSKKTARPNSEAPLSGSE
DADDSNKLSKKGKKAQKSTKKRDGSEEDEDNSKRSKERSRVNSSGESGGESDEFLQSRKGQKKNQKNKSV
PTVDSGNEDDDSSFKIKTVAQKKAEKKEREKKKRDEEKAKLRKMKEKEELEKGKKEQSKQREPQKRPEEE
VLTLRGTPDTGAASEEKGDTAAALEDDNEGDKKKKDKKKKKTEKDEKEKEKKKGPSKSTVKAIQEALAKL
KEEEERQKREEEERIKRLEELEAKRKEEERLEQEKRERKKQKEKERKERLKKEGKLLTKSQREARARAEV
TLRHLQAQGVEVPSKDSLPKKRPVYEDKKKKKTPQQLESKEVSETLEISAPVEAVDQGGPEKEETPPSVE
PEEEEDTEDAGLDDWEAMASDEEREKEGNMIHIEVEENPEEEEEEEEEEEEEESEDEEEEGDSEGSDGDE
EDCKLSDEKDSGKAGDTKPSKDASSDSEYDSDDDRTKEERAYDKAKRRIEKRRLEHGKNVNTEKLRAPII
CVLGHVDTGKTKILDKLRHTHVQDGEAGGITQQIGATNVPLEAINEQTKMIKNFDRENVRIPGMLIIDTP
GHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINILKSKKCPFIVALNKIDRLYDWKKSPDSDVAV
TLKKQKKNTKDEFEERAKAIIVEFAQQGLNAALFYENKDPRTFVSLVPTSAHTGDGMGSLIYLLVELTQT
MLSKRLAHCEELRAQVMEVKALPGMGTTIDVILINGRLKEGDTIIVPGVEGPIVTQIRGLLLPPPMKELR
VKNQYEKHKEVEAAQGVKILGKDLEKTLAGLPLLVAYKDDEIPVLKDELIHELKQTLNAIKLEEKGVYVQ
ASTLGSLEALLEFLKTSEVPYAGINIGPVHKKDVMKASVMLEHDPQYAVILAFDVRIERDAQEMADSLGV
RIFSAEIIYHLFDAFTKYRQDYKKQKQEEFKHIAVFPCKMKILPQYIFNSRDPIVIGVTVEAGQVKQGTP
MCVPSKNFVDIGIVTSIEINHKQVDVAKKGQEVCVKIEPIPGESPKMFGRHFEATDILVSKISRQSIDAL
KDWFRDEMQKSDWQLIVELKKVFEII


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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