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Report for CCDS30964.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30964.1 Public Homo sapiens 1 DDX59 24 110 108 CCDS HistoryNCBI Gene:83479Re-query CCDS DB by CCDS ID:30964.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30964.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000331314.11 ENSP00000330460.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000331314.11Link to Ensembl Protein Viewer:ENSP00000330460.6Re-query CCDS DB by Nucleotide ID:ENST00000331314Re-query CCDS DB by Protein ID:ENSP00000330460
Original member Current member NCBI NM_001031725.6 NP_001026895.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001031725.6Link to Protein Sequence:NP_001026895.2Re-query CCDS DB by Nucleotide ID:NM_001031725Re-query CCDS DB by Protein ID:NP_001026895Link to BLAST:NP_001026895.2
Original member Current member NCBI NM_001349799.3 NP_001336728.1 Accepted alive Link to Nucleotide Sequence:NM_001349799.3Link to Protein Sequence:NP_001336728.1Re-query CCDS DB by Nucleotide ID:NM_001349799Re-query CCDS DB by Protein ID:NP_001336728Link to BLAST:NP_001336728.1
Original member Current member NCBI NM_001349800.3 NP_001336729.1 Accepted alive Link to Nucleotide Sequence:NM_001349800.3Link to Protein Sequence:NP_001336729.1Re-query CCDS DB by Nucleotide ID:NM_001349800Re-query CCDS DB by Protein ID:NP_001336729Link to BLAST:NP_001336729.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001026895.2 619 Q5T1V6-1 619 100% 0 0
NP_001336728.1 619 Q5T1V6-1 619 100% 0 0
NP_001336729.1 619 Q5T1V6-1 619 100% 0 0

Chromosomal Locations for CCDS 30964.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 200644254 200644517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 200648439 200648567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 200649074 200649226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 200650425 200650676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 200659027 200659116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 200663919 200664086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 200665937 200666740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1860 nt):
ATGTTTGTTCCAAGATCTCTAAAAATCAAGAGGAATGCTAATGATGATGGCAAAAGTTGTGTGGCTAAGA
TA
ATTAAACCAGACCCAGAAGACCTTCAGTTGGACAAAAGCAGAGATGTTCCCGTTGATGCTGTAGCTAC
A
GAAGCAGCCACAATAGACAGGCACATCAGCGAATCATGCCCTTTCCCCAGCCCAGGTGGCCAGTTGGCA
GAG
GTTCATTCAGTAAGTCCCGAGCAGGGTGCGAAGGACAGCCATCCTTCTGAAGAGCCCGTTAAGTCAT
TT
TCCAAAACACAGCGCTGGGCAGAACCAGGGGAACCCATCTGTGTTGTCTGTGGTCGTTATGGAGAGTA
T
ATCTGTGATAAGACAGATGAAGATGTGTGTAGTTTGGAGTGTAAAGCGAAACATCTTCTACAAGTTAAG
GAA
AAGGAAGAGAAATCAAAACTCAGCAATCCACAGAAGGCTGATTCTGAGCCAGAGTCTCCACTGAATG
CT
TCCTATGTCTACAAAGAGCACCCCTTTATTTTGAACCTTCAGGAAGACCAGATTGAAAATCTTAAACA
G
CAGCTGGGAATTTTAGTTCAAGGGCAAGAAGTCACCAGGCCCATTATTGACTTTGAACATTGTAGTCTC
CCT
GAGGTCTTAAATCACAACTTGAAGAAATCAGGCTATGAGGTGCCAACTCCCATTCAAATGCAGATGA
TT
CCTGTGGGACTTCTGGGAAGAGACATTCTGGCCAGTGCAGATACTGGCTCAGGAAAAACAGCTGCTTT
T
CTTCTTCCTGTTATCATGCGAGCTTTATTCGAGAGCAAAACTCCATCTGCGCTCATTCTTACACCAACC
AGA
GAGTTAGCCATTCAGATAGAGAGACAAGCTAAAGAATTGATGAGTGGCCTGCCACGCATGAAAACTG
TG
CTTCTTGTAGGGGGCTTACCCTTACCCCCACAGCTTTATCGTCTGCAACAACATGTTAAGGTTATCAT
A
GCAACCCCTGGGCGACTTCTGGATATAATAAAGCAGAGCTCTGTAGAACTCTGTGGTGTAAAGATTGTG
GTA
GTAGATGAAGCTGATACCATGTTAAAGATGGGTTTTCAACAACAAGTGCTTGACATTTTGGAAAACA
TT
CCTAATGATTGTCAGACCATTTTGGTTTCAGCCACAATTCCAACTAGCATAGAACAGCTAGCAAGCCA
G
CTTCTGCATAATCCTGTGAGAATTATCACTGGAGAAAAGAACCTACCTTGTGCCAATGTACGTCAGATT
ATT
TTGTGGGTAGAAGACCCAGCCAAAAAGAAAAAATTATTTGAAATTTTAAATGATAAGAAACTCTTTA
AG
CCTCCAGTGTTAGTATTTGTGGACTGCAAACTAGGAGCAGATCTTTTGAGTGAAGCCGTTCAGAAAAT
C
ACAGGGCTGAAAAGCATATCTATACATTCAGAGAAGTCGCAAATAGAAAGGAAAAACATATTGAAGGGA
TTA
CTTGAAGGAGACTATGAAGTTGTAGTGAGCACAGGAGTCTTGGGACGAGGCCTAGACTTGATCAGTG
TC
AGGCTGGTTGTCAATTTTGATATGCCTTCAAGTATGGATGAGTATGTCCATCAGATTGGAAGAGTAGG
A
AGATTAGGTCAAAATGGAACAGCGATTACTTTCATCAATAATAATTCAAAAAGACTCTTCTGGGATATT
GCA
AAACGAGTAAAGCCCACAGGATCCATTCTTCCCCCTCAGTTATTAAATTCCCCATACCTTCATGACC
AG
AAGAGAAAGGAACAACAGAAAGATAAACAGACACAGAATGATCTGGTTACAGGAGCTAATCTTATGGA
T
ATTATCAGAAAACATGATAAAAGTAATTCTCAGAAATGA


Translation (619 aa):
MFVPRSLKIKRNANDDGKSCVAKIIKPDPEDLQLDKSRDVPVDAVATEAATIDRHISESCPFPSPGGQLA
E
VHSVSPEQGAKDSHPSEEPVKSFSKTQRWAEPGEPICVVCGRYGEYICDKTDEDVCSLECKAKHLLQVK
E
KEEKSKLSNPQKADSEPESPLNASYVYKEHPFILNLQEDQIENLKQQLGILVQGQEVTRPIIDFEHCSL
P
EVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRALFE
SKTPSALILTPT
R
ELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQHVK
VIIATPGRLLDIIKQSSVELCGVKIV
V
VDE
ADTMLKMGFQQQVLDILENIPNDCQTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQI
I
LWVEDPAKKKKLFEILN
DKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKG
L
LEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQ
IGRVGRLGQNGTAITFINNNSKRLFWDI
A
KRVKPTGSILPPQLLNSPYLHDQKRKEQQKDKQTQNDLVTGANLMDIIRKHDKSNSQK




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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