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Report for CCDS13908.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13908.1 Public Homo sapiens 22 SYN3 24 110 108 CCDS HistoryNCBI Gene:8224Re-query CCDS DB by CCDS ID:13908.1See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13908.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358763.7 ENSP00000351614.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000358763.7Link to Ensembl Protein Viewer:ENSP00000351614.2Re-query CCDS DB by Nucleotide ID:ENST00000358763Re-query CCDS DB by Protein ID:ENSP00000351614
Original member Current member NCBI NM_001369907.1 NP_001356836.1 Accepted alive Link to Nucleotide Sequence:NM_001369907.1Link to Protein Sequence:NP_001356836.1Re-query CCDS DB by Nucleotide ID:NM_001369907Re-query CCDS DB by Protein ID:NP_001356836Link to BLAST:NP_001356836.1
Original member Current member NCBI NM_001369908.1 NP_001356837.1 Accepted alive Link to Nucleotide Sequence:NM_001369908.1Link to Protein Sequence:NP_001356837.1Re-query CCDS DB by Nucleotide ID:NM_001369908Re-query CCDS DB by Protein ID:NP_001356837Link to BLAST:NP_001356837.1
Original member Current member NCBI NM_003490.4 NP_003481.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003490.4Link to Protein Sequence:NP_003481.3Re-query CCDS DB by Nucleotide ID:NM_003490Re-query CCDS DB by Protein ID:NP_003481Link to BLAST:NP_003481.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001356836.1 580 O14994 580 100% 0 0
NP_001356837.1 580 O14994 580 100% 0 0
NP_003481.3 580 O14994 580 100% 0 0

Chromosomal Locations for CCDS 13908.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 32513692 32513824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32518043 32518334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32527918 32528005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32528874 32529008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32533793 32533895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32538036 32538110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32541571 32541713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32596674 32596736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32864915 32865004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32868966 32869125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32931390 32931481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32980645 32980702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 33006352 33006662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1743 nt):
ATGAATTTCCTCCGGCGACGTCTCTCTGACAGCAGCTTCATGGCCAACCTGCCTAATGGCTATATGACGG
ACCTGCAACGCCCAGATAGCTCCACCAGCTCACCTGCTTCCCCCGCCATGGAGAGGAGGCACCCCCAGCC
CCTGGCTGCCTCCTTCTCCTCTCCAGGATCCAGCCTTTTTAGCTCCCTCTCCAGTGCCATGAAGCAGGCC
CCTCAGGCCACCTCAGGACTGATGGAGCCTCCAGGTCCCTCCACGCCCATTGTTCAAAGACCCAGGATCC
TGTTGGTGATCGATGATGCCCATACAGACTGGTCGAAGTATTTCCATGGGAAGAAGGTGAATGGAGAGAT
TGAGATCCGAGTGGAGCAGGCTGAATTCTCAGAGTTGAACCTAGCTGCCTATGTGACCGGGGGCTGCATG
GTGGACATGCAGGTCGTGAGAAATGGGACCAAAGTGGTGAGCAGATCCTTCAAGCCAGACTTCATCCTGG
TCCGCCAGCATGCCTACAGCATGGCCCTGGGGGAAGACTACCGCAGCCTGGTCATCGGCCTGCAGTATGG
AGGGCTGCCTGCTGTCAACTCTCTCTACTCCGTCTACAACTTCTGCAGCAAGCCCTGGGTGTTCTCTCAG
CTCATTAAGATCTTCCATTCCCTGGGTCCTGAGAAGTTCCCGCTTGTGGAGCAAACATTTTTCCCCAACC
ATAAGCCAATGGTCACAGCCCCACACTTCCCGGTGGTAGTCAAGCTGGGACATGCCCACGCTGGAATGGG
AAAGATCAAAGTGGAAAACCAGCTTGACTTCCAGGACATCACCAGCGTGGTCGCCATGGCCAAAACCTAC
GCCACCACCGAGGCCTTCATCGACTCCAAGTACGACATCCGCATCCAGAAAATTGGATCCAACTACAAGG
CTTACATGAGAACCTCCATCTCTGGGAACTGGAAGGCCAACACAGGCTCTGCCATGCTGGAGCAGGTGGC
CATGACAGAGAGGTACAGGCTGTGGGTGGACAGCTGCTCGGAAATGTTTGGCGGCCTGGACATCTGTGCC
GTCAAGGCTGTCCACAGCAAGGATGGCAGAGATTACATCATCGAGGTAATGGACAGCTCAATGCCGCTGA
TTGGAGAGCATGTGGAAGAGGACAGACAGCTGATGGCCGACCTTGTTGTCTCCAAAATGAGCCAGCTCCC
GATGCCAGGAGGCACAGCGCCCTCCCCCCTCAGACCTTGGGCTCCACAGATTAAATCAGCGAAATCCCCA
GGGCAAGCCCAGCTGGGGCCTCAGCTAGGCCAGCCCCAGCCACGCCCACCTCCGCAAGGAGGCCCTCGCC
AAGCTCAGTCTCCTCAGCCCCAGAGATCTGGAAGCCCCTCCCAACAGAGGCTCTCCCCACAAGGCCAGCA
GCCCCTGAGCCCCCAGTCCGGATCTCCACAGCAGCAAAGGTCACCAGGCTCTCCGCAGCTATCCCGGGCA
TCCAGTGGCAGCTCCCCAAACCAGGCCTCCAAGCCAGGTGCCACCCTCGCCTCACAGCCCCGGCCCCCTG
TGCAGGGCCGTAGTACCTCCCAGCAGGGTGAAGAGTCCAAGAAGCCAGCACCACCCCATCCGCATCTCAA
CAAATCTCAGTCCCTGACTAACAGCCTCAGCACATCCGACACCTCCCAGCGTGGGACCCCAAGTGAAGAC
GAGGCCAAGGCTGAAACCATCCGCAACCTGAGGAAGTCTTTTGCCAGCCTGTTCTCTGACTAA

Translation (580 aa):
MNFLRRRLSDSSFMANLPNGYMTDLQRPDSSTSSPASPAMERRHPQPLAASFSSPGSSLFSSLSSAMKQA
PQATSGLMEPPGPSTPIVQRPRILLVIDDAHTDWSKYFHGKKVNGEIEIRVEQAEFSELNLAAYVTGGCM
VDMQVVRNGTKVVSRSFKPDFILVRQHAYSMALGEDYRSLVIGLQYGGLPAVNSLYSVYNFCSKPWVFSQ
LIKIFHSLGPEKFPLVEQTFFPNHKPMVTAPHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMAKTY
ATTEAFIDSKYDIRIQKIGSNYKAYMRTSISGNWKANTGSAMLEQVAMTERYRLWVDSCSEMFGGLDICA
VKAVHSKDGRDYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKMSQLPMPGGTAPSPLRPWAPQIKSAKSP
GQAQLGPQLGQPQPRPPPQGGPRQAQSPQPQRSGSPSQQRLSPQGQQPLSPQSGSPQQQRSPGSPQLSRA
SSGSSPNQASKPGATLASQPRPPVQGRSTSQQGEESKKPAPPHPHLNKSQSLTNSLSTSDTSQRGTPSED
EAKAETIRNLRKSFASLFSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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