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Report for CCDS82550.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82550.1 Public Homo sapiens 2 SF3B1 24 110 108 CCDS HistoryNCBI Gene:23451Re-query CCDS DB by CCDS ID:82550.1Re-query CCDS DB by GeneID:23451See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82550.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000487698.5 ENSP00000419896.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000487698.5Link to Ensembl Protein Viewer:ENSP00000419896.1Re-query CCDS DB by Nucleotide ID:ENST00000487698Re-query CCDS DB by Protein ID:ENSP00000419896
Original member Current member EBI ENST00000652026.1 ENSP00000498652.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000652026.1Link to Ensembl Protein Viewer:ENSP00000498652.1Re-query CCDS DB by Nucleotide ID:ENST00000652026Re-query CCDS DB by Protein ID:ENSP00000498652
Original member Current member NCBI NM_001308824.1 NP_001295753.1 Accepted alive Link to Nucleotide Sequence:NM_001308824.1Link to Protein Sequence:NP_001295753.1Re-query CCDS DB by Nucleotide ID:NM_001308824Re-query CCDS DB by Protein ID:NP_001295753Link to BLAST:NP_001295753.1

Chromosomal Locations for CCDS 82550.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 197420378 197420542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 197421029 197421133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 197423808 197423974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 197434972 197434999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (465 nt):
ATGGCGAAGATCGCCAAGACTCACGAAGATATTGAAGCACAGATTCGAGAAATTCAAGGCAAGAAGGCAG
CTCTTGATGAAGCTCAAGGAGTGGGCCTCGATTCTACAGGTTATTATGACCAGGAAATTTATGGTGGAAG
TGACAGCAGATTTGCTGGATACGTGACATCAATTGCTGCAACTGAACTTGAAGATGATGACGATGACTAT
TCATCATCTACGAGTTTGCTTGGTCAGAAGAAGCCAGGATATCATGCCCCTGTGGCATTGCTTAATGATA
TACCACAGTCAACAGAACAGTATGATCCATTTGCTGAGCACAGACCTCCAAAGATTGCAGACCGGGAAGA
TGAATACAAAAAGCATAGGCGGACCATGATAATTTCCCCAGAGCGTCTTGATCCTTTTGCAGATGGTAAT
TCTTTCCCACTTTTCTATAAGTATTCAGAAATTTATTTGTATTAA

Translation (154 aa):
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDDDY
SSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHRRTMIISPERLDPFADGN
SFPLFYKYSEIYLY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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