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Report for CCDS31501.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31501.2 Public Homo sapiens 11 OR4C15 24 110 108 CCDS HistoryNCBI Gene:81309Re-query CCDS DB by CCDS ID:31501.2See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 31501.1
The coding region has been updated to start at a downstream in-frame start codon that is supported by conservation data.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 31501.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000642128.1 ENSP00000493126.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000642128.1Link to Ensembl Protein Viewer:ENSP00000493126.1Re-query CCDS DB by Nucleotide ID:ENST00000642128Re-query CCDS DB by Protein ID:ENSP00000493126
Original member Current member NCBI NM_001001920.3 NP_001001920.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001001920.3Link to Protein Sequence:NP_001001920.2Re-query CCDS DB by Nucleotide ID:NM_001001920Re-query CCDS DB by Protein ID:NP_001001920Link to BLAST:NP_001001920.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001920.2 316 Q8NGM1 316 100% 0 0

Chromosomal Locations for CCDS 31501.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 55554469 55555419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGCAAAACCAAAGCTTTGTAACTGAGTTTGTCCTCCTGGGACTTTCACAGAATCCAAATGTTCAGGAAA
TAGTATTTGTTGTATTTTTGTTTGTCTACATTGCAACTGTTGGGGGCAACATGCTAATTGTAGTAACCAT
TCTCAGCAGCCCTGCTCTTCTGGTGTCTCCTATGTACTTCTTCTTGGGCTTCCTGTCCTTCCTGGATGCG
TGCTTCTCATCTGTCATCACCCCAAAGATGATTGTAGACTCCCTCTATGTGACAAAAACCATCTCTTTTG
AAGGCTGCATGATGCAGCTCTTTGCTGAACACTTCTTTGCTGGGGTGGAGGTGATTGTCCTCACAGCCAT
GGCCTATGATCGTTATGTGGCCATTTGCAAGCCCTTGCATTACTCTTCTATCATGAACAGGAGGCTCTGT
GGCATTCTGATGGGGGTAGCCTGGACAGGGGGCCTCTTGCATTCCATGATACAAATTCTTTTTACTTTCC
AGCTTCCCTTTTGTGGCCCCAATGTCATCAATCACTTTATGTGTGACTTGTACCCGTTACTGGAGCTTGC
CTGCACTGATACTCACATCTTTGGCCTCATGGTGGTCATCAACAGTGGGTTTATCTGCATCATAAACTTC
TCCTTGTTGCTTGTCTCCTATGCTGTCATCTTGCTCTCTCTGAGAACACACAGTTCTGAAGGGCGCTGGA
AAGCTCTCTCCACCTGTGGATCTCACATTGCTGTTGTGATTTTGTTCTTTGTCCCATGCATATTTGTATA
TACACGACCTCCATCTGCTTTTTCCCTTGACAAAATGGCGGCAATATTTTATATCATCTTAAATCCCTTG
CTCAATCCTTTGATTTACACTTTCAGGAATAAGGAAGTAAAACAGGCCATGAGGAGAATATGGAACAGAC
TGATGGTGGTTTCTGATGAGAAAGAAAATATTAAACTTTAA

Translation (316 aa):
MQNQSFVTEFVLLGLSQNPNVQEIVFVVFLFVYIATVGGNMLIVVTILSSPALLVSPMYFFLGFLSFLDA
CFSSVITPKMIVDSLYVTKTISFEGCMMQLFAEHFFAGVEVIVLTAMAYDRYVAICKPLHYSSIMNRRLC
GILMGVAWTGGLLHSMIQILFTFQLPFCGPNVINHFMCDLYPLLELACTDTHIFGLMVVINSGFICIINF
SLLLVSYAVILLSLRTHSSEGRWKALSTCGSHIAVVILFFVPCIFVYTRPPSAFSLDKMAAIFYIILNPL
LNPLIYTFRNKEVKQAMRRIWNRLMVVSDEKENIKL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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