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Report for CCDS40718.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40718.1 Public Mus musculus 9 Tbx18 23 108 98 CCDS HistoryNCBI Gene:76365Re-query CCDS DB by CCDS ID:40718.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40718.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034991.7 ENSMUSP00000034991.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034991.7Link to Ensembl Protein Viewer:ENSMUSP00000034991.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000034991Re-query CCDS DB by Protein ID:ENSMUSP00000034991
Original member Current member NCBI NM_023814.4 NP_076303.3 Accepted alive Link to Nucleotide Sequence:NM_023814.4Link to Protein Sequence:NP_076303.3Re-query CCDS DB by Nucleotide ID:NM_023814Re-query CCDS DB by Protein ID:NP_076303Link to BLAST:NP_076303.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076303.3 613 Q9EPZ6 613 99.8369% 0 1

Chromosomal Locations for CCDS 40718.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 87705221 87705945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 87707767 87707861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 87713498 87713562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 87715523 87715690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 87724302 87724473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 87727364 87727465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 87729461 87729665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 87730535 87730844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1842 nt):
ATGGCGGAGAAGCGGAGGGGCTCACCGTGCAGCATGCTAAGCCTCAAGGCGCACGCCTTCTCTGTGGAGG
CACTGATCGGCGCCGAGAAGCAGCAACAGCTTCAAAAGAAGCGGAGAAAGCTGGCCACGGAAGAGGCGGC
GGGGGCGGTGGAAGACGCAGGCTGCAGCCGTAGCGGAGGCGCGGGGGAGCACGGCTGCTCGGAGGCCGAC
GAAGAAGCGGCTGCCCCGCCGCCGGCAGCCGGGGCGGCGTCCGGGCCAGCGCGGAGCTGCGCGGACGCGG
AGCGGAGCTGTGGCTCCCGCGGAGCGGCGGGCAGCTGTGAGGATGGCTTCCTGCAGGGCGCCTCCCCGTT
GGCATCCCCGGGAGGCTCCCCGAAAGGGTCTCCCGTACCTGGCTTGGCACGACCGGGGACCCCGCTGCCC
GCGCCGCAGGCCCCGAGAGTAGATCTGCAAGGAGCGGAGCTCTGGAAGCGCTTTCACGAAATAGGCACCG
AGATGATCATCACCAAAGCCGGCAGGCGCATGTTTCCAGCAATGCGGGTGAAGATCTCCGGATTAGACCC
TCACCAGCAATATTACATTGCCATGGATATTGTGCCGGTGGACAACAAGAGATACAGGTATGTTTACCAT
AGCTCTAAGTGGATGGTGGCAGGAAATGCTGATTCCCCGGTGCCACCCAGAGTATACATTCATCCAGACT
CACCGGCCTCTGGGGAGACTTGGATGAGACAAGTCATCAGCTTCGACAAGCTGAAACTTACCAACAATGA
GCTGGATGACCAAGGCCATATCATTCTTCATTCTATGCACAAATACCAACCACGTGTGCATGTCATCCGT
AAAGATTGCGGAGATGATCTGTCCCCCATCAAGCCTGTTCCATCAGGAGAGGGAGTGAAGGCATTCTCCT
TTCCAGAAACCGTCTTCACAACTGTCACTGCCTATCAGAATCAGCAGATTACTCGCCTTAAGATAGACAG
GAATCCATTTGCCAAAGGTTTCCGAGACTCTGGGAGGAACAGAATGGGTTTGGAAGCTCTGGTGGAGTCA
TACGCATTCTGGAGGCCATCACTACGGACTCTCACCTTTGAAGATATCCCTGGAATCCCAAAGCAAGGCA
ACACAAGTTCTTCAGCTCTGCTCCAAGGCACTGGGAATGCTGTCCCTGCTACACATCCTCACCTGTTGTC
TGGATCCTCTTGCTCCTCTCCTGCCTTCCATCTGGGGCCGAACACCAGCCAGCTGTGTAGTCTGGCTCCA
GCTGACTATTCGGCCTGTGCCCGTTCAGGCCTTGCCCTCAATCGATACAGCACATCCTTGGCAGAGACCT
ACAGCAGGCTTACCAACCAGAGCAGTGAGACCTTTGCCCCACCTAGGACTCCTTCCTACGTGAGTGTGAG
CAGCAACCCGTCTGTGAACATGTCCATGGGCGGCACTGATGGGGACACCTTCAGCTGCCCACAGACCAGC
CTGTCCATGCAGATTTCAGGAATGTCCCCTCAACTTCAGTACATCATGCCATCGCCGTCCGGCAATGCCT
TTGCTGCTAACCAGACCCACCAGAGTTCTTACAACACCTTCCGATTGCACAGTCCCTGTGCCTTGTATGG
ATATAACTTCTCCACATCCCCCAAACTGGCTGCCAGTCCTGAGAAAATTGTTTCTTCCCAAGGAAGTTTC
TTGGGGTCCTCACCAAGTGGGACCATGACTGATCGTCAGATGTTGCCCCCTGTGGAAGGAGTGCACCTGC
TCAGCAGTGGGGGCCAGCAGAGTTTCTTTGACTCCAGGACCCTAGGAAGTTTAACTCTGCCATCTTCTCA
AGTGTCTGCACATATGGTCTGA

Translation (613 aa):
MAEKRRGSPCSMLSLKAHAFSVEALIGAEKQQQLQKKRRKLATEEAAGAVEDAGCSRSGGAGEHGCSEAD
EEAAAPPPAAGAASGPARSCADAERSCGSRGAAGSCEDGFLQGASPLASPGGSPKGSPVPGLARPGTPLP
APQAPRVDLQGAELWKRFHEIGTEMIITKAGRRMFPAMRVKISGLDPHQQYYIAMDIVPVDNKRYRYVYH
SSKWMVAGNADSPVPPRVYIHPDSPASGETWMRQVISFDKLKLTNNELDDQGHIILHSMHKYQPRVHVIR
KDCGDDLSPIKPVPSGEGVKAFSFPETVFTTVTAYQNQQITRLKIDRNPFAKGFRDSGRNRMGLEALVES
YAFWRPSLRTLTFEDIPGIPKQGNTSSSALLQGTGNAVPATHPHLLSGSSCSSPAFHLGPNTSQLCSLAP
ADYSACARSGLALNRYSTSLAETYSRLTNQSSETFAPPRTPSYVSVSSNPSVNMSMGGTDGDTFSCPQTS
LSMQISGMSPQLQYIMPSPSGNAFAANQTHQSSYNTFRLHSPCALYGYNFSTSPKLAASPEKIVSSQGSF
LGSSPSGTMTDRQMLPPVEGVHLLSSGGQQSFFDSRTLGSLTLPSSQVSAHMV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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