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Report for CCDS19677.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19677.1 Public Mus musculus 5 Snrnp35 23 108 98 CCDS HistoryNCBI Gene:76167Re-query CCDS DB by CCDS ID:19677.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 19677.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031349.8 ENSMUSP00000031349.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031349.8Link to Ensembl Protein Viewer:ENSMUSP00000031349.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031349Re-query CCDS DB by Protein ID:ENSMUSP00000031349
Original member Current member EBI ENSMUST00000111453.1 ENSMUSP00000107080.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111453.1Link to Ensembl Protein Viewer:ENSMUSP00000107080.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111453Re-query CCDS DB by Protein ID:ENSMUSP00000107080
Original member Current member NCBI NM_029532.2 NP_083808.1 Accepted alive Link to Nucleotide Sequence:NM_029532.2Link to Protein Sequence:NP_083808.1Re-query CCDS DB by Nucleotide ID:NM_029532Re-query CCDS DB by Protein ID:NP_083808Link to BLAST:NP_083808.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083808.1 244 Q9D384 244 100% 0 0

Chromosomal Locations for CCDS 19677.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 124490126 124490860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (735 nt):
ATGAGCGACTGGATGCCCATTGCCAAGGAATATGACCCGCTTAAAGCTGGCAGCATCGATGGTACAGATG
AAGACCCACATGACCGAGCTGTGTGGAGGGCCATGCTGGCCCGCTATGTCCCCAACAAAGGAGTCACCGG
AGACCCCCTCCTTACCCTGTTTGTGGCACGACTGAACTTGCAGACCAAAGAGGAAAAGTTAAAGGAAGTC
TTCTCCCGGTATGGTGACATTCGGCGGCTGAGGCTGGTTCGGGACCTGGTGACAGGCTTCTCCAAGGGCT
ACGCCTTCATTGAGTACAAGGAGGAGAGGGCCCTGATGAAGGCCTACAGAGATGCTGATGGCCTGGTCAT
TGACCAGCACGAGATATTCGTGGACTATGAGCTAGAGAGGACTCTCCGTGGCTGGATCCCTCGGCGGCTG
GGTGGCGGATTGGGTGGGAAAAAGGAATCTGGGCAGCTGAGGTTCGGTGGGCGAGATCGGCCTTTCCGAA
AACCCATTAACTTGCCAGTTGTCAAGAATGAGCCACATAGAGAAGGGAAAAGGGAAAGGAGGGAGCGATC
TCGATCTAGGGACAGACACTGGGACCCCAGGCCCAGGGAACGGGATCATGACAGGGGCCGAGAGAAGCAC
TGGCAAGAGAGGGCCAGGGTGTGGCCTGAGAATGATTGGGAAAGAGAGAGGGAGTTCAGGGAGGAGAGGG
TCAAAAGCCGGGACAAGAGGGACAGAAGTAAGTAG

Translation (244 aa):
MSDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVTGDPLLTLFVARLNLQTKEEKLKEV
FSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERALMKAYRDADGLVIDQHEIFVDYELERTLRGWIPRRL
GGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNEPHREGKRERRERSRSRDRHWDPRPRERDHDRGREKH
WQERARVWPENDWEREREFREERVKSRDKRDRSK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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