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Report for CCDS19768.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19768.1 Public Mus musculus 5 Pop7 23 108 98 CCDS HistoryNCBI Gene:74097Re-query CCDS DB by CCDS ID:19768.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19768.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031728.4 ENSMUSP00000031728.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031728.4Link to Ensembl Protein Viewer:ENSMUSP00000031728.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000031728Re-query CCDS DB by Protein ID:ENSMUSP00000031728
Original member Current member EBI ENSMUST00000111035.1 ENSMUSP00000106664.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111035.1Link to Ensembl Protein Viewer:ENSMUSP00000106664.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111035Re-query CCDS DB by Protein ID:ENSMUSP00000106664
Original member NCBI NM_028753.2 NP_083029.1 Updated not alive Link to Nucleotide Sequence:NM_028753.2Link to Protein Sequence:NP_083029.1Re-query CCDS DB by Nucleotide ID:NM_028753Re-query CCDS DB by Protein ID:NP_083029
Current member NCBI NM_028753.3 NP_083029.1 Accepted alive Link to Nucleotide Sequence:NM_028753.3Link to Protein Sequence:NP_083029.1Re-query CCDS DB by Nucleotide ID:NM_028753Re-query CCDS DB by Protein ID:NP_083029Link to BLAST:NP_083029.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083029.1 140 Q9DCH2 140 100% 0 0

Chromosomal Locations for CCDS 19768.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 137501647 137502069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (423 nt):
ATGGCAGAAAACAGAGAACCCCGCTGTGCCATCGAGGCTGAGCTGGACCCTGTGGAGTACACCCTTCGGA
AGCGACTTCCCCACCGCTTGCCCCGGAGGCCCAACGACATTTATGTCAACATGAAGACTGACTTTAAGGC
CCAGCTAGCTCGCTGCCAAAAGCTCCTGGACGGAGGCACTAGGGGGCAGAACGCATGCACTGAAATCTAC
ATTCATGGCTTGGGCCTGGCCATCAACCGGGCCATCAACATCGCCCTGCAGCTGCAGGCGGGCAGCTTTG
GGTCCCTACAGGTGGCCGCCAATACCTCCACCGTGGAGCTGGTGGACGAGTTGGAGCCAGAGACTGACTC
TCGGGAGCCCCTGACGAGGGTCAGGAACAACTCAGCCATCCACATCCGAGTCTTCAGGGTCACGCCCAAG
TAA

Translation (140 aa):
MAENREPRCAIEAELDPVEYTLRKRLPHRLPRRPNDIYVNMKTDFKAQLARCQKLLDGGTRGQNACTEIY
IHGLGLAINRAINIALQLQAGSFGSLQVAANTSTVELVDELEPETDSREPLTRVRNNSAIHIRVFRVTPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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