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Report for CCDS59470.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59470.1 Public Homo sapiens 4 USP17L29 24 110 108 CCDS HistoryNCBI Gene:728405Re-query CCDS DB by CCDS ID:59470.1See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 59470.1
This CCDS representation lacks full-length human transcript support and it is therefore inferred, but it is supported by data in PMID:10936051.

Public since: CCDS release 12, NCBI annotation release 104, Ensembl annotation release 71

Review status: Reviewed (by CCDS collaboration)

Sequence IDs included in CCDS 59470.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000511681.1 ENSP00000422969.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000511681.1Link to Ensembl Protein Viewer:ENSP00000422969.1Re-query CCDS DB by Nucleotide ID:ENST00000511681Re-query CCDS DB by Protein ID:ENSP00000422969
Original member Current member NCBI NM_001242332.1 NP_001229261.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001242332.1Link to Protein Sequence:NP_001229261.1Re-query CCDS DB by Nucleotide ID:NM_001242332Re-query CCDS DB by Protein ID:NP_001229261Link to BLAST:NP_001229261.1

Chromosomal Locations for CCDS 59470.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 9353638 9355230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGGAGGACGACTCACTCTACTTGAGAGGTGAGTGGCAGTTCAACCACTTTTCAAAACTCACATCTTCTC
GGCCCGATGCAGCTTTTGCTGAAATCCAGCGGACTTCTCTCCCTGAGAAGTCACCACTCTCATGTGAGAC
CCGTGTCGACCTCTGTGATGATTTGGCTCCTGTGGCAAGACAGCTTGCTCCCAGGGAGAAGCTTCCTCTG
AGTAGCAGGAGACCTGCTGCGGTGGGGGCTGGGCTCCAGAATATGGGAAATACCTGCTACGTGAACGCTT
CCTTGCAGTGCCTGACATACACACCGCCCCTTGCCAACTACATGCTGTCCCGGGAGCACTCTCAAACGTG
TCATCGTCACAAGGGCTGCATGCTCTGTACTATGCAAGCTCACATCACACGGGCCCTCCACAATCCTGGC
CACGTCATCCAGCCCTCACAGGCATTGGCTGCTGGCTTCCATAGAGGCAAGCAGGAAGATGCCCATGAAT
TTCTCATGTTCACTGTGGATGCCATGAAAAAGGCATGCCTTCCCGGGCACAAGCAGGTAGATCATCACTC
TAAGGACACCACCCTCATCCACCAAATATTTGGAGGCTACTGGAGATCTCAAATCAAGTGTCTCCACTGC
CACGGCATTTCAGACACTTTTGACCCTTACCTGGACATCGCCCTGGATATCCAGGCAGCTCAGAGTGTCC
AGCAAGCTTTGGAACAGTTGGTGAAGCCCGAAGAACTCAATGGAGAGAATGCCTATCATTGTGGTGTTTG
TCTCCAGAGGGCGCCGGCCTCCAAGACGTTAACTTTACACACCTCTGCCAAGGTCCTCATCCTTGTATTG
AAGAGATTCTCCGATGTCACAGGCAACAAGATTGCCAAGAATGTGCAATATCCTGAGTGCCTTGACATGC
AGCCATACATGTCTCAGCCGAACACAGGACCTCTCGTCTATGTCCTCTATGCTGTGCTGGTCCACGCTGG
GTGGAGTTGTCACAACGGACATTACTTCTCTTATGTCAAAGCTCAAGAAGGCCAGTGGTATAAAATGGAT
GATGCCGAGGTCACCGCCTCTAGCATCACTTCTGTCCTGAGTCAACAGGCCTACGTCCTCTTTTACATCC
AGAAGAGTGAATGGGAAAGACACAGTGAGAGTGTGTCAAGAGGCAGGGAACCAAGAGCCCTTGGCGCAGA
AGACACCGACAGGCGAGCAACGCAAGGAGAGCTCAAGAGAGACCACCCCTGCCTCCAGGCCCCCGAGTTG
GACGAGCACTTGGTGGAAAGAGCCACTCAGGAAAGCACCTTAGACCACTGGAAATTCCTTCAAGAGCAAA
ACAAAACGAAGCCTGAGTTCAACGTCAGAAAAGTCGAAGGTACCCTGCCTCCCGACGTACTTGTGATTCA
TCAATCAAAATACAAGTGTGGGATGAAGAACCATCATCCTGAACAGCAAAGCTCCCTGCTAAACCTCTCT
TCGTCGACCCCGACACATCAGGAGTCCATGAACACTGGCACACTCGCTTCCCTGCGAGGGAGGGCCAGGA
GATCCAAAGGGAAGAACAAACACAGCAAGAGGGCTCTGCTTGTGTGCCAGTGA

Translation (530 aa):
MEDDSLYLRGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPL
SSRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPG
HVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHC
HGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKTLTLHTSAKVLILVL
KRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMD
DAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPEL
DEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLNLS
SSTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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