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Report for CCDS21439.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21439.1 Public Mus musculus 7 Rab38 23 108 98 CCDS HistoryNCBI Gene:72433Re-query CCDS DB by CCDS ID:21439.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21439.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107256.3 ENSMUSP00000102877.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107256.3Link to Ensembl Protein Viewer:ENSMUSP00000102877.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107256Re-query CCDS DB by Protein ID:ENSMUSP00000102877
Original member Current member NCBI NM_028238.7 NP_082514.4 Accepted alive Link to Nucleotide Sequence:NM_028238.7Link to Protein Sequence:NP_082514.4Re-query CCDS DB by Nucleotide ID:NM_028238Re-query CCDS DB by Protein ID:NP_082514Link to BLAST:NP_082514.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082514.4 211 Q8QZZ8 211 100% 0 0

Chromosomal Locations for CCDS 21439.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 88430402 88430603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 88450481 88450761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 88490608 88490760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (636 nt):
ATGCAGACACCTCACAAGGAGCACCTGTACAAGCTGCTGGTGATCGGCGACCTGGGTGTGGGCAAGACCA
GCATTATCAAGCGCTATGTGCACCAAAACTTCTCCTCGCACTACCGGGCCACCATTGGTGTGGACTTCGC
GCTGAAGGTGCTCCACTGGGACCCAGAGACGGTGGTGCGCTTGCAGCTCTGGGACATTGCTGGTCAAGAA
AGATTTGGAAACATGACAAGAGTTTATTACCGGGAAGCTATGGGGGCATTTATTGTTTTTGATGTCACCA
GACCAGCCACATTTGAAGCCGTGGCAAAGTGGAAAAATGATTTGGACTCAAAGTTAACGCTCCCTAATGG
TAAGCCAGTGTCAGTGGTTCTGTTGGCCAACAAATGTGACCAAGGGAAGGATGTGCTTATGAACAATGGA
CTCAAGATGGACCAGTTCTGCAAGGAGCATGGCTTCGTAGGATGGTTTGAAACATCAGCCAAGGAAAACA
TAAACATTGATGAAGCCTCAAGATGCCTGGTCAAGCACATACTTGCAAATGAGTGTGACCTCCTAGAGTC
TATAGAACCGGACATTGTGAAGCCCCATCTCACATCGCCCAAGGTTGTCAGCTGCTCTGGCTGTGCCAAA
TCCTAG

Translation (211 aa):
MQTPHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDIAGQE
RFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLTLPNGKPVSVVLLANKCDQGKDVLMNNG
LKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILANECDLLESIEPDIVKPHLTSPKVVSCSGCAK
S


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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