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Report for CCDS36502.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36502.1 Public Mus musculus 12 Noxred1 23 108 98 CCDS HistoryNCBI Gene:71275Re-query CCDS DB by CCDS ID:36502.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 36502.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021423.7 ENSMUSP00000021423.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021423.7Link to Ensembl Protein Viewer:ENSMUSP00000021423.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000021423Re-query CCDS DB by Protein ID:ENSMUSP00000021423
Original member Current member EBI ENSMUST00000222480.1 ENSMUSP00000152486.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000222480.1Link to Ensembl Protein Viewer:ENSMUSP00000152486.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000222480Re-query CCDS DB by Protein ID:ENSMUSP00000152486
Original member Current member NCBI NM_027744.1 NP_082020.1 Accepted alive Link to Nucleotide Sequence:NM_027744.1Link to Protein Sequence:NP_082020.1Re-query CCDS DB by Nucleotide ID:NM_027744Re-query CCDS DB by Protein ID:NP_082020Link to BLAST:NP_082020.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082020.1 366 Q9D3S5 366 100% 0 0

Chromosomal Locations for CCDS 36502.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 87221255 87221444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87223045 87223267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87224158 87224309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87224858 87225038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87226911 87227110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87233402 87233556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1101 nt):
ATGGAAATGCTAGAAGACCTTGAGTCTCTGAGGTTTGAGTTTGGGATTCCAGAGGAAGAACGTTACTGGC
TG
TACTTACAGGGCCGTTATCGGGGATTGATGATCAAGGGCTGTGCCCATGCAGCCTTCTTCTGCAAAAT
G
TTCTCTACTTTGAGCAACTTATTGCAGAATCTGCCACGCACAATACATCCCCGGACTGTGTCATTTGAT
AAC
GCCGCTACTGAGGATGAACTGCTAACCGTGGGCATCATTGGGTGTGGCCACCTTGGAAAGCAGCTGA
CT
AATGTATTGCTGAAAACCGTCCCTATCCCTGCCGAGAACCTGCAGATCTCCACTAGGAGGCCAGAGTC
C
CTGGGTGAGTTACGGAAACTAGGGGTCCGGTGCGTCTATGACAACGCTGCTGTGGCGAGCTGGGCCAAA
GTG
TTGTTCCTCTGCTGTCTGCCTGCCCAGCTGCCTAATATCTGCCTAGAAATTCAATCCAAACTCAACA
AG
CACTGCACCGTGTACAGCTTTGTATCCGCCATTCCGCTACCCAGGTTGAAAAGTTTACTGAACCACAC
C
AATATCCTGAGGCCCCAGTACCAATTTGCTGAGGATTATGACAACATCTGGGGAGAGAATGAGGAGGTC
CCA
ATTGCTCTCCAAGATACAACGATTATCCGGGGTACCTGCCCCTACAATAATCTTGGGGGAGTAATCC
TT
AATGTCAAGTGGATAGAGGGGCTGTGCTATGCCCTCATCAATGCCTGTACGTCAAGGAGCGTGTTTCA
C
TCACAGGTGCTGAAGCTTCTAAACAAACTGCTTCTCCCTATGCACTTAGAAAGCTGCACGACAGACCCA
GAA
TCCTGCCCCCAGTTTAATTTAACAGATTTCATGAGCAAAAGCTACGTCAAAAACTTGTATCAAAAAA
G
G
CCTTTCCCCTGGTTTGATCTGACTACTGTGCAACTCAAGGAAACTCCTTTTAGCCAGCACATCTCAGC
C
ACTCCTTCTCTTCAGGACCACATTAGTCTTTTGTACTGTGAAGTATTTGGCCTCACCATAAGCGAAGAA
GAA
TTGCCTTATATTTCCACAGTTATCCGGCCCCTAGTAGAGGAGAAATGA


Translation (366 aa):
MEMLEDLESLRFEFGIPEEERYWLYLQGRYRGLMIKGCAHAAFFCKMFSTLSNLLQNLPRTIHPRTVSFD
N
AATEDELLTVGIIGCGHLGKQLTNVLLKTVPIPAENLQISTRRPESL
GELRKLGVRCVYDNAAVASWAK
V
LFLCCLPAQLPNICLEIQSKLNKHCTVYSFVSAIPLP
RLKSLLNHTNILRPQYQFAEDYDNIWGENEEV
P
IALQDTTIIRGTCPYNNL
GGVILNVKWIEGLCYALINACTSRSVFHSQVLKLLNKLLLPMHLESCTTDP
E
SCPQFNLTDFMSKSYVKNLYQK
RPFPWFDLTTVQLKETPFSQHISATPSLQDHISLLYCEVFGLTISEE
E
LPYISTVIRPLVEEK




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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