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Report for CCDS23989.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23989.1 Public Mus musculus 10 Rnf126 23 108 98 CCDS HistoryNCBI Gene:70294Re-query CCDS DB by CCDS ID:23989.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23989.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047203.8 ENSMUSP00000039486.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047203.8Link to Ensembl Protein Viewer:ENSMUSP00000039486.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000047203Re-query CCDS DB by Protein ID:ENSMUSP00000039486
Original member Current member NCBI NM_144528.3 NP_653111.1 Accepted alive Link to Nucleotide Sequence:NM_144528.3Link to Protein Sequence:NP_653111.1Re-query CCDS DB by Nucleotide ID:NM_144528Re-query CCDS DB by Protein ID:NP_653111Link to BLAST:NP_653111.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653111.1 313 Q91YL2 313 100% 0 0

Chromosomal Locations for CCDS 23989.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 79759087 79759236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79760791 79760906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79760989 79761082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79761430 79761499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79761565 79761633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79762085 79762329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79762482 79762545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79762647 79762705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79766753 79766827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGGCCGAGGCGTCGCCGCAGCCCGGACGGTACTTCTGCCACTGCTGCTCGGTAGAGATCGTGCCGCGCC
TGCCGGATTACATCTGCCCAAGGTGCGAGTCTGGCTTCATTGAGGAGCTTCCAGAAGAGACCAGGAACAC
AGAGAATGGCTCAGCCCCCTCCACAGCCCCCACCGACCAGAACCGGCAGCCATTTGAGAATGTGGACCAG
CACCTGTTCACGCTGCCACAGGGATACAGCCAGTTTGCCTTTGGCATCTTCGACGATAGCTTTGAGATTC
CCACGTTCCCTCCTGGAGCCCAGGCCGATGATGGCAGGGACCCTGAGAGCCGACGGGAGAGAGAGCACCA
GTCTCGGCATCGGTACGGGGCCCGGCAGCCCCGTGCCCGCCTCACTGCCCGCCGGGCCACTGGCCGGCAT
GAAGGTGTCCCTACGCTGGAAGGGATCATCCAGCAGCTCGTGAATGGCATCATCTCTCCGGCTGCTGTGC
CCAGCCTGGGCCTTGGTCCCTGGGGCGTCCTGCACTCGAACCCAATGGACTACGCCTGGGGGGCCAACGG
CCTGGACACCATCATCACGCAGCTCCTCAATCAGTTTGAGAACACCGGCCCCCCACCTGCAGACAAGGAG
AAGATTCAGGCTCTCCCCACGGTCCCAGTCACAGAGGAACACGTGGGCTCAGGGCTTGAGTGCCCAGTGT
GTAAAGAAGACTATGCACTGGGTGAGAGTGTGCGGCAGTTGCCCTGCAACCACCTGTTCCACGACAGCTG
CATCGTGCCCTGGCTGGAGCAGCATGACAGCTGCCCGGTCTGCCGTAAGAGCCTCACTGGACAGAACACA
GCCACCAATCCCCCAGGCTTGACCGGTGTAGGTTTCTCCTCGTCCTCGTCCTCATCCTCCTCCAGCTCGC
CCAGCAATGAGAACGCCACAAGCAACTCCTGA

Translation (313 aa):
MAEASPQPGRYFCHCCSVEIVPRLPDYICPRCESGFIEELPEETRNTENGSAPSTAPTDQNRQPFENVDQ
HLFTLPQGYSQFAFGIFDDSFEIPTFPPGAQADDGRDPESRREREHQSRHRYGARQPRARLTARRATGRH
EGVPTLEGIIQQLVNGIISPAAVPSLGLGPWGVLHSNPMDYAWGANGLDTIITQLLNQFENTGPPPADKE
KIQALPTVPVTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT
ATNPPGLTGVGFSSSSSSSSSSSPSNENATSNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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