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Report for CCDS39220.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39220.1 Public Mus musculus 5 Svop 23 108 98 CCDS HistoryNCBI Gene:68666Re-query CCDS DB by CCDS ID:39220.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39220.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058472.12 ENSMUSP00000050730.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058472.12Link to Ensembl Protein Viewer:ENSMUSP00000050730.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000058472Re-query CCDS DB by Protein ID:ENSMUSP00000050730
Original member Current member NCBI NM_026805.1 NP_081081.1 Accepted alive Link to Nucleotide Sequence:NM_026805.1Link to Protein Sequence:NP_081081.1Re-query CCDS DB by Nucleotide ID:NM_026805Re-query CCDS DB by Protein ID:NP_081081Link to BLAST:NP_081081.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081081.1 548 Q8BFT9 548 100% 0 0

Chromosomal Locations for CCDS 39220.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 114028258 114028464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114030097 114030186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114031561 114031642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114032709 114032820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114035153 114035260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114038536 114038612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114041824 114041897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114042188 114042316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114042806 114042931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114045568 114045631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114054477 114054601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114060058 114060129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114063025 114063123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114064868 114064953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114065526 114065686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114091152 114091186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1647 nt):
ATGGAGGAGGATCTGTTCCAGCTCAGGCAGTTGCCGGTGGTGAAATTCCGACGCACAGGGGAGAGTGCTC
GGTCAGAGGACGATGCGGCTTCCGGGGAGCATGACATCCAGATTGAGGGGGTCCGAGTGGGCCTAGAAGC
CATCGAGCTGGATGATGGAGCCGCTGTCCCCAAGGAGTTTGCCAATCCCACTGATGACACTTTCATGGTG
GAAGATGCGGTGGAAGCCATTGGGTTTGGAAGATTTCAGTGGAAGCTCTCTGTTCTCACAGGCTTGGCTT
GGATGGCAGATGCCATGGAGATGATGATTCTGAGCATCCTGGCTCCTCAGCTGCATTGCGAGTGGCGACT
CCCCAGCTGGCAGGTGGCGCTGCTCACTTCGGTGGTCTTCATCGGCATGATGTCCAGTTCCACGCTCTGG
GGAAACATCTCGGACCAGTATGGCAGGAAAACTGGGCTGAAGATCAGTGTGCTCTGGACCCTGTACTATG
GCATCCTCAGCGCCTTCGCGCCCGTGTATAGCTGGATCCTGGTGCTCCGAGGCCTGGTGGGCTTTGGGAT
TGGAGGGGTGCCCCAGTCGGTGACGCTGTACGCCGAGTTCCTTCCCATGAAGGCCAGAGCCAAGTGCATT
TTGCTGATTGAGGTCTTCTGGGCCATAGGGACCGTGTTCGAGGTGCTTCTGGCTGTGTTTGTGATGCCCA
GCCTGGGCTGGCGCTGGCTGCTCCTGCTCTCGGCCGCTCCACTACTACTCTTCGCTGTTCTGTGCTTCTG
GCTGCCAGAGAGTGCTAGGTACGATGTGCTGTCCGGGAACCAGGAAAAGGCAATCGCTACTTTAAAGCGG
ATTGCAACGGAAAATGGAGCCCCCATGCCTCTGGGAAAGCTTATCATCTCCAGACAGGAAGACCGAGGCA
AAATGAGGGACCTTTTCACACCCCACTTTCGTTGGACAACTCTGCTGCTGTGGTTTATATGGTTCTCCAA
TGCCTTCTCTTACTACGGCTTGGTTCTGCTCACCACGGAACTCTTCCAGGCAGGAGACGTCTGCAGCATC
TCCAGCCGGAAGAAGGCAGTGGAAGCCAAATGCAGCTTGGCCTGTGAGTACCTGAGCAAAGAGGATTACA
TGGACCTGCTGTGGACCACCCTGTCCGAGTTCCCAGGTGTCCTTGTGACTCTGTGGGTCATCGACCGCCT
GGGCCGCAAGAAGACCATGGCTCTGTGTTTCATCATCTTCTCCCTCTGCAGCCTCCTGCTGTTCATCTGC
ATTGGAAGAAATGTGCTAACCCTCTTACTGTTCATCGCCAGAGCGTTTATTTCTGGAGGCTTCCAAGCAG
CCTATGTTTACACGCCTGAGGTGTATCCCACGGCGACGAGGGCGCTGGGTTTGGGCACCTGCAGCGGCAT
GGCGAGAGTGGGCGCTCTCATTACTCCGTTCATAGCTCAGGTGATGCTGGAATCTTCCGTGTACCTGACC
CTGGCTGTCTACAGTGGCTGCTGCCTCCTGGCTGGCGTGGCCTCCTGCTTTCTGCCCATAGAGACCAAAG
GCCGAGCACTGCAGGAGTCCAGCCACCGGGAGTGGGGCCAAGAGATGGTTGGCCGAGGGACAAACAGCGC
AGGTGTCCCCAGGTCGGACTCTGGCTCTCAGGAGTAG

Translation (548 aa):
MEEDLFQLRQLPVVKFRRTGESARSEDDAASGEHDIQIEGVRVGLEAIELDDGAAVPKEFANPTDDTFMV
EDAVEAIGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFIGMMSSSTLW
GNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCI
LLIEVFWAIGTVFEVLLAVFVMPSLGWRWLLLLSAAPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKR
IATENGAPMPLGKLIISRQEDRGKMRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSI
SSRKKAVEAKCSLACEYLSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFIIFSLCSLLLFIC
IGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLT
LAVYSGCCLLAGVASCFLPIETKGRALQESSHREWGQEMVGRGTNSAGVPRSDSGSQE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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