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Report for CCDS19700.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19700.1 Public Mus musculus 5 Sumf2 23 108 98 CCDS HistoryNCBI Gene:67902Re-query CCDS DB by CCDS ID:19700.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19700.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171300.7 ENSMUSP00000126036.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171300.7Link to Ensembl Protein Viewer:ENSMUSP00000126036.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171300Re-query CCDS DB by Protein ID:ENSMUSP00000126036
Original member NCBI NM_026445.2 NP_080721.1 Updated not alive Link to Nucleotide Sequence:NM_026445.2Link to Protein Sequence:NP_080721.1Re-query CCDS DB by Nucleotide ID:NM_026445Re-query CCDS DB by Protein ID:NP_080721
Current member NCBI NM_026445.3 NP_080721.1 Accepted alive Link to Nucleotide Sequence:NM_026445.3Link to Protein Sequence:NP_080721.1Re-query CCDS DB by Nucleotide ID:NM_026445Re-query CCDS DB by Protein ID:NP_080721Link to BLAST:NP_080721.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080721.1 308 Q8BPG6 308 100% 0 0

Chromosomal Locations for CCDS 19700.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 129846996 129847086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129849901 129850057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129852874 129852985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129854023 129854067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129854688 129854838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129858240 129858295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129859837 129859921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129860070 129860214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129862639 129862723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGCGCTCTGAGTTCTGGTTCCCCAGCATGGGTTCCTTGCTCCCTCCGGTGTTGCTGCTGTGGCTCCTGT
CCTGCCCCAGGCTTCAGCTAGGACATGCCCAGGATCCTGCCATGGTGCATCTGCCAGGTGGCCGGTTTCT
GATGGGGACAGACGCTCCAGATGGCAGAGACGGTGAAGGGCCTGCCCGGGAAGTGACAGTAAAACCCTTT
GCCATCGACATATTTCCAGTCACCAATAAAGACTTCAGGGAGTTTGTCAGGGAGAAGAAGTACCAGACTG
AAGCCGAGGCATTCGGGTGGAGCTTCGTCTTTGAGGATTTTGTCTCCCCTGAGCTCAGAAAGCAAGAAAA
TCTGATGCCGGCTGTTCACTGGTGGCAGCCAGTGCCAAAGGCATTTTGGAGGCAGCCTGCAGGTCCCGGC
TCTGGCATCCGAGAGAAACTGGAGCTTCCCGTGGTACACGTGAGCTGGAACGACGCTGGTGCTTACTGCG
CATGGCGGGGGAGACGCTTGCCCACAGAAGAGGAGTGGGAGTTTGCAGCCCGAGGGGGCTTGAAGGGTCA
GGTTTATCCATGGGGGAACCGGTTCCAGCCAAACCGCACCAACTTATGGCAGGGAAAGTTCCCCAAAGGT
GACAAAGCTGAAGATGGTTTTCATGGACTGTCACCAGTGAACGCTTTCCCCCCACAGAACAACTACGGAC
TGTATGACCTCATGGGCAATGTGTGGGAGTGGACAGCGTCCACATACCAACCTGCTGGCCAGGACATGCG
TGTCCTCCGGGGGGCATCATGGATCGACACCGCAGACGGCTCTGCTAATCACAGGGCTCGGGTCACCACC
AGGATGGGAAACACTCCAGACTCAGCCTCAGACAACCTGGGCTTCCGCTGCGCCTCCAGTGCAGGCCGAC
CGAAGGAGGACCTGTGA

Translation (308 aa):
MRSEFWFPSMGSLLPPVLLLWLLSCPRLQLGHAQDPAMVHLPGGRFLMGTDAPDGRDGEGPAREVTVKPF
AIDIFPVTNKDFREFVREKKYQTEAEAFGWSFVFEDFVSPELRKQENLMPAVHWWQPVPKAFWRQPAGPG
SGIREKLELPVVHVSWNDAGAYCAWRGRRLPTEEEWEFAARGGLKGQVYPWGNRFQPNRTNLWQGKFPKG
DKAEDGFHGLSPVNAFPPQNNYGLYDLMGNVWEWTASTYQPAGQDMRVLRGASWIDTADGSANHRARVTT
RMGNTPDSASDNLGFRCASSAGRPKEDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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