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Report for CCDS20448.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
20448.1 |
Public |
Mus musculus |
6 |
Plxnd1 |
23 |
108 |
98 |
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Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 20448.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
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EBI |
ENSMUST00000015511.14 |
ENSMUSP00000015511.8 |
Accepted |
alive |
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NCBI |
NM_026376.3 |
NP_080652.2 |
Updated |
not alive |
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NCBI |
NM_026376.4 |
NP_080652.2 |
Accepted |
alive |
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RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_080652.2 |
1925 |
Q3UH93 |
1925 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 20448.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (5778 nt): ATGGCTCGTCGCGCCGCGGGCGGCGCACCCCCTAGCGCCCGGGCCGCCGCGGCCGTCCCCTTGCGTCCGC GCCCTCACTCGCGGGGCCCTGGTCTGCTGCCGCTGCCTCTGCTGCTGCTGCTCGGGGCGGCACGGGCCGG CGCCCTAGAGATCCAGCGCCGTTTCCCCTCGCCCACGCCCACCAACAACTTCGCCCTGGACGGCACGGCG GGCACCGTGTACTTGGCGGCAGTGAACCGCCTGTACCAACTGTCGAGTGCCAACTTGAGCCTGGAAGCCG AGGCGACCGTGGGTCCCGTGCCGGACAGCCCGCTGTGTCACGCCCCGCAGCTCCCGCAGGCCTCGTGCGA GCACCCGCGGCGCCTCACGGACAACTACAACAAAATCCTGCAGTTGGACCCGGGCCAGGGTCTGGTGGTC GCGTGCGGCTCCATCTACCAGGGTCTGTGCCAGCTGAGGCGCCGGGGCAACATCTCAGCCCTGGCCGTGA GCTTTCCGCCTGCCGCGCCGACCGCAGAACCGGTCACCGTGTTCCCCAGCATGCTCAACGTGGCCGCCAA CCACCCCAACGCGTCCACTGTGGGACTGGTGCTGCCGCCTACCTCGGGCACCGGGGGCAGCCGTCTGCTC GTGGGCGCCACGTACACCGGCTTCGGCAGCGCTTTCTTCCCGCGCAACCGTAGCCTAGAAGACCACCGCT TCGAGAACACGCCCGAGATCGCTATCCGCTCCCTGGACGCGCGTGGAGACTTGGCCAAGCTCTTCACCTT CGACCTTAACCCGTCGGACGATAACATCCTGAAGATCAAGCAGGGCGCCAAGGAGCAGCACAAGCTGGGC TTCGTGCGTGCCTTCTTGCACCCGGCGGTGCCACCGCACAGCGCGCAGCCCTACGCGTACCTGGCGCTCA ACAGCGAGGCGCGTGCGGGCGACAAGGACAGCCAGGCGCGCAGCCTGCTGGCGCGCATCTGCCTGCCCCG CGGCGCGGGTGGCGACGCCAAGAAGCTCACCGAGTCCTACATCCAACTGGGCTTGCAGTGCGCGGGCGGC GCGGGCCGCGGCGACCTCTACAGCCGCCTCGTGTCGGTTTTCCCCGCGCGCGAGCAGTTCTTCGCTGTCT TCGAGAGGCCCCAGGGCGCCCCAGGTGCCCGCAACGCCCCGGCCGCGCTTTGCGCCTTCCGCTTCGACGA CGTGCAGGCTGCCATTCGTGCAGCGCGCACCGCCTGCTTCGTGGAGCCGGCGCCCGACGTGGTGGCGGTG TTGGACAGTGTGGTGCAGGGCACCGGGCCGGCCTGCGAGAGCAAGCGCAACATACAGCTGCAGCCGGAGC AACTGGATTGCGGAGCGGCCCACCTGCAGCACCCACTGACCATCCTGCAGCCGCTGAGGGCATCGCCCGT GTTCCGTGCTCCAGGGCTCACGGCCGTGGCTGTGGCCAGTGCCAACAACTACACGGCCGTCTTTCTGGGC ACCGCCACAGGGAGGCTCCTCAAGATCAGCCTGAACGAGAGCATGCAGGTAGTAAGCAGGCGAGTGCTGA CTGTAGCCTATGGGGAGCCTGTGCATCACGTCATGCAGTTTGACCCCATGGATCCTGGTTACCTATACCT GATGACATCCCACCAGATGGCCCGAGTGAAGGTGGCAGCGTGTGAGGTACACTCCACCTGCGGGGACTGC GTGGGTGCGGCCGATGCCTACTGTGGTTGGTGCACTCTGGAGACCCGGTGCACACTCCAGCAGGATTGCA CCAACTCCAGCCAGCCACATTTCTGGACCAGTGCCAGTGAGGGCCCCAGCCGCTGCCCTGCCATGACAGT ACTGCCCTCGGAGATTGATGTGCACCGGGACTACACAGGTATGATCTTACAGATCTCAGGAAGCCTGCCC AGCCTCAGCGGCATGGAGATGGCTTGTGACTATGGAAATGGCGTTCGAACGGTGGCCCGGGTACCTGGCC CTGCCTATGATCATCAGATTGCCTACTGCAATCTCCTGCCCAGGGCCCAGTTTCCATCCTTTCCTGCTGG CCAGGACCACGTGACCGTTGAGATGTCTGTAAGGGTCAAAGGACACAACATTGTCTCAGCCAATTTCACC ATCTACGACTGCAGCCGAATTGGACAAGTCTACCCCCATACAGCCTGTACCAGCTGCCTGTCCACACAGT GGCCTTGCTCCTGGTGCATCCAGCTGCATTCATGTGTCTCCAACCAGTCTCAGTGCCAGGACTCGCCAAA CCCCACGAGTCCTCAGGACTGTCCCCAGATCCTGCCCTCGCCCCTAGCGCCCGTGCCCACAGGTGGCTCC CAAGACATCCTGGTGCCCCTGACTAAAGCCACCTTCTTCCATGGTTCCTCCCTCGAGTGCAGCTTTGGGC TGGAAGAGAGCTTTGAGGCTGTATGGGCGAATAACTCACTGGTCCGCTGCAACCAAGTGGTGCTGCACAC AACCCAGAAGAGCCAGGTATTTCCACTGAGTCTGAAGCTGAAGGGGCCGCCAGACCGATTCCTAGACAGC CCTAACCCCATGACAGTTGTGGTCTACAACTGTGCTATGGGCAGCCCTGACTGTTCCCAGTGCCTGGGCC GTGAGGACCTGGGTCACCTCTGTGTTTGGAATGATGGCTGTCGTCTAAGAGGGCCCCTGCAGCCACTCCC TGGCACCTGCCCAGCCCCTGAAATCCGAGCGATTGAGCCTCTGAGTGGCCCCTTGGACGGTGGGACTTTG CTGACCATCCGTGGCAGGAACTTGGGCCGTCGGCTCAGTGATGTGGCACATGGTGTGTGGATTGGCAGTG TGGCCTGTGAACCCCTGGCTGACAGATACACCGTTTCAGAGGAGATCGTGTGTGCCACAGGGCCTGCCGC AGGGGCCTTCTCAGACGTGGTAACGGTGAACGTCTCCAAAGAAGGCAGGTCTCGGGAACAGTTCTCCTAT GTGCTGCCCACAGTCCACTCACTGGAGCCTTCCATGGGCCCAAAGGCCGGGGGTACAAGGATCACCATTC ACGGCAGTGACCTCAACGTGGGCTCTATGCTCCAGGTCCTGGTGAATGACACGGACCCCTGCACAGATCT TACGCGCACAGCCACCAGCATCACCTGCACTGTGCCAGGGGGTACCCTGCCCTCTCCAGTGCCTGTGTGT GTGCGCTTCGAGAGCCGGGGCTGCGTGCACGGAAACCTCACCTTCTGGTACATGCAGAACCCAGTCATCA CAGCCATCAGCCCAGGCCGCAGCCCTGTCAGTGGCGGCAGGACCATCACTGTGGCTGGCGAACGCTTCCA CATGGTGCAGAATGTATCAATGGCTGTACACCACATTGGCCGGGAGCCCACGTTCTGCAAGGTTCTCAAC TCCACACTCATCACCTGCCCATCTCCTGGAGCCCTGAGCAATGCTTCGGCGCCTGTAGACTTCTTCATCA ATGGCCGGGCATATGCAGACGAGGCAGCCGAGGAGCTGCTGGACCCTGCAGAGGCACAGAGGGGCAGCCG GTTCCGCCTAGACTACCTCCCCAACCCACAGTTCTCCACAGCCAAGAGGGAGAAGTGGATCAAACATCAC CCAGGAGAGCCGCTCACCCTCGTCATCCATAAGGAGCAAGACAGCCTGGGGCTGGAGAGCCATGAGTACC ACATCAAGATTGGCCAGGTGTCCTGCGACATCCAAATCATCTCAGACAGAGTCATCCACTGCTCAGTCAA TGAGTCGCTGGGCACGGCTGAAGGACAGCTGCCCATCACAATCCAGGTGGGGAACTTCAACCAGACCATC GCCACACTGCAACTGGGGGGCAGCGAGACGGCCATTGTGGTGTCCATCGTCATCTGCAGTGTCCTGTTGC TGCTGTCTGTGGTTGCTCTGTTCGTCTTCTGCACCAAGAGCCGCCGTGCCGAGCGCTACTGGCAGAAGAC CCTGCTGCAGATGGAAGAGATGGAGTCTCAGATCCGAGAGGAGATCCGTAAAGGCTTTGCGGAGCTGCAG ACAGACATGACGGATCTCACCAAGGAGCTGAACCGCAGCCAGGGCATCCCCTTCTTGGAGTACAAGCACT TCGTGACTCGAACCTTCTTCCCCAAGTGCTCTTCCCTCTATGAAGAGCGGTATGTGCTGCCCTCGAAGAC CCTCAACTCCCAGGGTGGCTCCCCGCCACAGGAAACCCACCCACTGCTGGGAGAGTGGAACATCCCTGAA CACTGTCGGCCCAGCATGGAGGAGGGGATCAGCCTGTTCTCCTCACTGCTCAACAACAAGCACTTCCTCA TCGTCTTCGTCCATGCTCTGGAGCAGCAGAAGGACTTCGCAGTGCGTGACAGGTGCAGCCTGGCGTCCCT GCTGACCATCGCGCTGCACGGCAAGCTGGAGTACTATACGAGCATCATGAAGGAGCTGCTCGTGGACCTC ATCGACGCCTCGGCGGCCAAGAACCCCAAGCTCATGTTGCGGCGCACGGAGTCTGTGGTGGAGAAGATGC TTACCAACTGGATGTCCATCTGCATGTACGGCTGCCTGAGGGAGACAGTAGGTGAGCCGTTCTTCCTGCT GTTGTGTGCCATCAAGCAGCAGATCAACAAAGGCTCCATCGACGCCATCACAGGCAAAGCCCGCTACACA CTCAACGAGGAGTGGCTGCTGAGGGAGAACATTGAGGCCAAGCCCCGGAACTTGAACGTGTCCTTCCAGG GCTGTGGGATGGACTCCCTCAGCGTGCGGGCCATGGACACCGACACGCTGACGCAGGTGAAGGAGAAGAT CCTGGAAGCCTTCTGCAAGAACGTCCCCTACTCACAGTGGCCGCGGGCGGAGGACGTGGACCTTGAATGG TTTGCCTCGAGTACCCAGAGCTACGTCCTCCGGGACCTGGATGACACATCAGTGGTGGAGGACGGCCGTA AGAAACTGAACACACTGGCCCACTACAAGATACCTGAGGGCGCCTCCCTAGCCATGAGCCTCACAGACAA GAAGGACAGTACCCTGGGCAGAGTGAAAGACTTGGACACAGAAAAGTATTTCCATTTGGTGCTACCTACG GATGAGCTGGTAGAGCCTAAGAAATCTCACCGGCAGAGCCACCGCAAGAAAGTATTGCCAGAGATCTACC TGACCCGCCTGCTGTCCACCAAGGGCACGCTGCAGAAGTTCCTAGATGACCTGTTCAAGGCTATCCTGAG CATCCGAGAGGACAAGCCCCCGCTGGCTGTCAAGTATTTCTTTGACTTCCTAGAGGAACAGGCGGAGAAG AGAGGCATCTCCGACCCTGACACCCTGCATATCTGGAAGACCAACAGCCTTCCCCTGCGCTTCTGGGTGA ACATCTTAAAAAATCCCCAGTTTGTCTTCGACATAGAGAAGACGGACCACATCGACGCCTGCCTGTCTGT CATCGCACAGGCCTTCATCGATGCCTGCTCCATCTCTGACCTGCAGCTGGGCAAGGACTCACCCACCAAC AAGCTTCTGTACGCGAAGGAGATCCCTGAGTACCGGAAGACCGTACAGCGCTATTATAAACAGATCCAAG ACATGACGCCGCTCAGCGAGCAGGAAATGAACGCACACCTGGCCGAGGAGTCTCGGAAATACCAGAATGA GTTCAACACAAACGTGGCCATGGCTGAGATTTATAAATATGCTAAGAGGTATCGACCACAGATCATGGCT GCCCTGGAGGCCAACCCCACAGCCCGCAGGACCCAGCTACAGCACAAGTTTGAACAGGTGGTGGCTCTGA TGGAAAACAATATCTATGAGTGTTACAGCGAGGCCTGA
Translation (1925 aa): MARRAAGGAPPSARAAAAVPLRPRPHSRGPGLLPLPLLLLLGAARAGALEIQRRFPSPTPTNNFALDGTA GTVYLAAVNRLYQLSSANLSLEAEATVGPVPDSPLCHAPQLPQASCEHPRRLTDNYNKILQLDPGQGLVV ACGSIYQGLCQLRRRGNISALAVSFPPAAPTAEPVTVFPSMLNVAANHPNASTVGLVLPPTSGTGGSRLL VGATYTGFGSAFFPRNRSLEDHRFENTPEIAIRSLDARGDLAKLFTFDLNPSDDNILKIKQGAKEQHKLG FVRAFLHPAVPPHSAQPYAYLALNSEARAGDKDSQARSLLARICLPRGAGGDAKKLTESYIQLGLQCAGG AGRGDLYSRLVSVFPAREQFFAVFERPQGAPGARNAPAALCAFRFDDVQAAIRAARTACFVEPAPDVVAV LDSVVQGTGPACESKRNIQLQPEQLDCGAAHLQHPLTILQPLRASPVFRAPGLTAVAVASANNYTAVFLG TATGRLLKISLNESMQVVSRRVLTVAYGEPVHHVMQFDPMDPGYLYLMTSHQMARVKVAACEVHSTCGDC VGAADAYCGWCTLETRCTLQQDCTNSSQPHFWTSASEGPSRCPAMTVLPSEIDVHRDYTGMILQISGSLP SLSGMEMACDYGNGVRTVARVPGPAYDHQIAYCNLLPRAQFPSFPAGQDHVTVEMSVRVKGHNIVSANFT IYDCSRIGQVYPHTACTSCLSTQWPCSWCIQLHSCVSNQSQCQDSPNPTSPQDCPQILPSPLAPVPTGGS QDILVPLTKATFFHGSSLECSFGLEESFEAVWANNSLVRCNQVVLHTTQKSQVFPLSLKLKGPPDRFLDS PNPMTVVVYNCAMGSPDCSQCLGREDLGHLCVWNDGCRLRGPLQPLPGTCPAPEIRAIEPLSGPLDGGTL LTIRGRNLGRRLSDVAHGVWIGSVACEPLADRYTVSEEIVCATGPAAGAFSDVVTVNVSKEGRSREQFSY VLPTVHSLEPSMGPKAGGTRITIHGSDLNVGSMLQVLVNDTDPCTDLTRTATSITCTVPGGTLPSPVPVC VRFESRGCVHGNLTFWYMQNPVITAISPGRSPVSGGRTITVAGERFHMVQNVSMAVHHIGREPTFCKVLN STLITCPSPGALSNASAPVDFFINGRAYADEAAEELLDPAEAQRGSRFRLDYLPNPQFSTAKREKWIKHH PGEPLTLVIHKEQDSLGLESHEYHIKIGQVSCDIQIISDRVIHCSVNESLGTAEGQLPITIQVGNFNQTI ATLQLGGSETAIVVSIVICSVLLLLSVVALFVFCTKSRRAERYWQKTLLQMEEMESQIREEIRKGFAELQ TDMTDLTKELNRSQGIPFLEYKHFVTRTFFPKCSSLYEERYVLPSKTLNSQGGSPPQETHPLLGEWNIPE HCRPSMEEGISLFSSLLNNKHFLIVFVHALEQQKDFAVRDRCSLASLLTIALHGKLEYYTSIMKELLVDL IDASAAKNPKLMLRRTESVVEKMLTNWMSICMYGCLRETVGEPFFLLLCAIKQQINKGSIDAITGKARYT LNEEWLLRENIEAKPRNLNVSFQGCGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEW FASSTQSYVLRDLDDTSVVEDGRKKLNTLAHYKIPEGASLAMSLTDKKDSTLGRVKDLDTEKYFHLVLPT DELVEPKKSHRQSHRKKVLPEIYLTRLLSTKGTLQKFLDDLFKAILSIREDKPPLAVKYFFDFLEEQAEK RGISDPDTLHIWKTNSLPLRFWVNILKNPQFVFDIEKTDHIDACLSVIAQAFIDACSISDLQLGKDSPTN KLLYAKEIPEYRKTVQRYYKQIQDMTPLSEQEMNAHLAEESRKYQNEFNTNVAMAEIYKYAKRYRPQIMA ALEANPTARRTQLQHKFEQVVALMENNIYECYSEA
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