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Report for CCDS37718.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37718.1 Public Mus musculus 18 Mtpap 23 108 98 CCDS HistoryNCBI Gene:67440Re-query CCDS DB by CCDS ID:37718.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37718.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025077.6 ENSMUSP00000025077.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025077.6Link to Ensembl Protein Viewer:ENSMUSP00000025077.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000025077Re-query CCDS DB by Protein ID:ENSMUSP00000025077
Original member NCBI NM_026157.3 NP_080433.1 Updated not alive Link to Nucleotide Sequence:NM_026157.3Link to Protein Sequence:NP_080433.1Re-query CCDS DB by Nucleotide ID:NM_026157Re-query CCDS DB by Protein ID:NP_080433
Current member NCBI NM_026157.4 NP_080433.1 Accepted alive Link to Nucleotide Sequence:NM_026157.4Link to Protein Sequence:NP_080433.1Re-query CCDS DB by Nucleotide ID:NM_026157Re-query CCDS DB by Protein ID:NP_080433Link to BLAST:NP_080433.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080433.1 585 Q9D0D3 585 100% 0 0

Chromosomal Locations for CCDS 37718.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 4375622 4375778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 4379569 4379741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 4380654 4380887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 4383189 4383413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 4386171 4386382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 4386953 4387179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 4394974 4395066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 4395156 4395229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 4396105 4396467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1758 nt):
ATGGCTGCTCGCGGCGTGGGGTTATTGACCCGTTTGCCCGTGTGTTCCCAGAGACGGAACCGAATCCCGC
GCTCTATTTCCAGGCTCCTCAGTTGTCCAGGGACTATTGCGGCGAGCATCGGGAGCGAAGAACAGTCTTC
GGTGGTTGCGGAAACAGGCATTGAAGACAAGACCCTCCAAAAGAAATTCTCTGAGGTGCAGAAAGAGAGA
AGAGAACAGGCCCAGCGGACTGTTTTGATACATTGTCCAAATAATATCAATGAGAAAAAATTTCTCAAGT
ATTTATCCCAGCATGGACCAGTCAATAATCATTTCTTCTACGAGAGCTTTGGTCTCTTTGCTGTTGTAGA
ATTTTGCCAAAAAGACAGTATAAAGTCATTGCAGAATGGAACACATACTCCAACCCAGAGCACAGAGGCT
GCAATTCCATTTAAGTCACGGTTCTTGAACTTAAGGCTGAAGAATCCGTCTAGCCAAGTATCTGGACAGC
CATTTGTACAGACAACCAACCAGTCACCTCCTTCAAGCAAAAAGCTCTTTGAATTACTGAGTTATGCAGA
AAGCATAGAGGAGCAGCTGAACACTCTCCTGAAGGCCTTCCAGCTCACAGAAGAGAATATCAGGCTCCGC
CATCTCACCTGCTCTCTGATTGAGGACATTGCTGCTGCATATTTTCCCAGCTGTGTCATCCGGCCCTTTG
GCTCCTCAGTGAACACATTTGGCAAATTAGGATGTGATTTGGACATGTTTTTAGATCTAGATGAAACTGG
AAAACTTGATGTTCACAAGAATACAGGGAATTTTTTTATGGAATTTCAAGTGAAAAACGTTCCTTCAGAA
AGAATTGCAACCCAGAAGATCCTATCTGTAATAGGAGAGTGCCTTGACAATTTTGGCCCTGGCTGTGTGG
GTGTTCAGAAGATACTCAATGCTCGATGTCCACTGGTGAGATTCTCCCATCAGGGCTCTGGATTCCAGTG
TGATCTGACTGCTAACAATAGTATTGCTTTGAAAAGTTCCGAACTCCTTTATATATATGGCTCCCTGGAT
TCGAGAGTAAGAGCTTTGGTGTTCAGTGTGCGATGCTGGGCTCGGGCACATTCATTAACAAGCAGTATTC
CTGGTGCTTGGATTACAAACTTCTCCTTAACAGTGATGGTCATCTTTTTCCTCCAGAGAAGATCACCTCC
CATTCTTCCAACTCTAGATTCCCTAAAGTCCATAGCAGATGCTGAAGATAGATGTATTCTAGAGGGGAAC
AATTGTACATTCGTCCAGGATGTGAATAAAATTCAACCTTCTGGAAACACAGAAACATTAGAATTACTAA
TAAAGGAATTTTTTGAGTATTTTGGCAATTTCGCTTTCAATAAAAATTCCATAAACATTCGACAGGGAAG
GGAACAAAACAAGCCTGATTCCTCTCCTCTATACATCCAGAATCCTTTTGAAACATCTCTCAACATAAGC
AAAAATGTCAGTCAGAGCCAGCTACAAAAATTTGTGGAACTGGCAAGAGACAGTGCCTGGATTTTGGAAC
AGGAAGATAAGAATCAGCCTTTTTCTTCGAGTAGGCAACCCTGGGGACTGGCTGCCCTCCTGCTGCCACC
GGGGTCAGGCCACACATCTCTCTCCCGGAAGAAGAAGAAAAAGCCGATGAGTGAAAAAGTCAAAGGCTTG
TTAGCATCCATAAAAAGTAACAGCCCTGACAGTTCCACAGATACCAGTGGAAAGAGAACAATTAGTACAC
AGGCATGA

Translation (585 aa):
MAARGVGLLTRLPVCSQRRNRIPRSISRLLSCPGTIAASIGSEEQSSVVAETGIEDKTLQKKFSEVQKER
REQAQRTVLIHCPNNINEKKFLKYLSQHGPVNNHFFYESFGLFAVVEFCQKDSIKSLQNGTHTPTQSTEA
AIPFKSRFLNLRLKNPSSQVSGQPFVQTTNQSPPSSKKLFELLSYAESIEEQLNTLLKAFQLTEENIRLR
HLTCSLIEDIAAAYFPSCVIRPFGSSVNTFGKLGCDLDMFLDLDETGKLDVHKNTGNFFMEFQVKNVPSE
RIATQKILSVIGECLDNFGPGCVGVQKILNARCPLVRFSHQGSGFQCDLTANNSIALKSSELLYIYGSLD
SRVRALVFSVRCWARAHSLTSSIPGAWITNFSLTVMVIFFLQRRSPPILPTLDSLKSIADAEDRCILEGN
NCTFVQDVNKIQPSGNTETLELLIKEFFEYFGNFAFNKNSINIRQGREQNKPDSSPLYIQNPFETSLNIS
KNVSQSQLQKFVELARDSAWILEQEDKNQPFSSSRQPWGLAALLLPPGSGHTSLSRKKKKKPMSEKVKGL
LASIKSNSPDSSTDTSGKRTISTQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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