NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS24227.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24227.1 Public Mus musculus 10 Tspan31 23 108 98 CCDS HistoryNCBI Gene:67125Re-query CCDS DB by CCDS ID:24227.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24227.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060991.5 ENSMUSP00000057751.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060991.5Link to Ensembl Protein Viewer:ENSMUSP00000057751.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000060991Re-query CCDS DB by Protein ID:ENSMUSP00000057751
Original member Current member NCBI NM_025982.4 NP_080258.1 Accepted alive Link to Nucleotide Sequence:NM_025982.4Link to Protein Sequence:NP_080258.1Re-query CCDS DB by Nucleotide ID:NM_025982Re-query CCDS DB by Protein ID:NP_080258Link to BLAST:NP_080258.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080258.1 210 Q9CQ88 210 100% 0 0

Chromosomal Locations for CCDS 24227.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 127068116 127068190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127068269 127068382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127068480 127068611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127068908 127068988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127069346 127069513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127070115 127070177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (633 nt):
ATGGTTTGCGGCGGATTTGCCTGTTCCAGGAATGCGCTGTGCGCTCTCAACGTGGTTTATATGCTTGTGG
GCTTTTTGCTCATTGGCGTGGCTGCCTGGGGCAAGGGCCTCGGTGTGGTGTCTAGCATTCACATCATTGG
AGGAGTCATTGCTGTGGGAGTCTTCCTTCTCCTCATCGCGGTGGCAGGACTGGTGGGCGCCGCGAACCAC
CATCAAGTGCTGCTCTTCTTTTATATGATCATCCTAGGTTTGGTCTTCATCTTCCAGTTTGGAATCTCTT
GCTCATGTCTGGCTATTAACAGAAACACACAGGCAGATGTCATCAATGCTTCGTGGTCGGTCTTGAGCAA
CAGTACCCGGCATGAACTGGAGAGAAGTTTTGACTGCTGTGGCTTGTTCAACCTTACAACCCTGCGCCTA
CAAGATGATACTTCCTGTAGTGCGGTGTGCAAAACTAAGAGCTCTACATGCCAGATGTGTGGGGAGAGGT
TCCTTAAACATTCAGACAAAGCCCTCAAGATCCTAGGAGGTGTTGGGCTCTTCTTTAGTTTCACAGAGAT
CCTTGGTGTTTGGCTAGCAATGAGATTCCGGAATCAAAAGGACCCTCGAGCCAACCCCAGTGCCTTCCTA
TGA

Translation (210 aa):
MVCGGFACSRNALCALNVVYMLVGFLLIGVAAWGKGLGVVSSIHIIGGVIAVGVFLLLIAVAGLVGAANH
HQVLLFFYMIILGLVFIFQFGISCSCLAINRNTQADVINASWSVLSNSTRHELERSFDCCGLFNLTTLRL
QDDTSCSAVCKTKSSTCQMCGERFLKHSDKALKILGGVGLFFSFTEILGVWLAMRFRNQKDPRANPSAFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH