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Report for CCDS75200.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75200.1 Public Homo sapiens 4 TTC29 24 110 108 CCDS HistoryNCBI Gene:83894Re-query CCDS DB by CCDS ID:75200.1Re-query CCDS DB by GeneID:83894See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75200.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000513335.5 ENSP00000423505.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000513335.5Link to Ensembl Protein Viewer:ENSP00000423505.1Re-query CCDS DB by Nucleotide ID:ENST00000513335Re-query CCDS DB by Protein ID:ENSP00000423505
Original member Current member NCBI NM_001300761.4 NP_001287690.1 Accepted alive Link to Nucleotide Sequence:NM_001300761.4Link to Protein Sequence:NP_001287690.1Re-query CCDS DB by Nucleotide ID:NM_001300761Re-query CCDS DB by Protein ID:NP_001287690Link to BLAST:NP_001287690.1

Chromosomal Locations for CCDS 75200.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 146707158 146707188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146707485 146707551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146803457 146803685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146820125 146820248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146833806 146833897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146867498 146867583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146874716 146874928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146903544 146903729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146909026 146909249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146937594 146937677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146939804 146939901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146942584 146942655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGATTCCGATGTTCACTGTAACATTGGAAGACTCTGGAACTCTGTGGAAAAGTCTTCACAGCTCCTCTG
AATCCGAAATGACCACCCTGCCCCCACTGCCCATGACACGCCCGAAGCTTACAGCCTTAGCCAGACAGAA
GCTGCCTTGCTCCTCCAGAAAAATTCCAAGGTCTCAATTGATCAAAGAAAAAGATGACATAGATCATTAT
CTAGAGGTAAATTTCAAAGGATTATCAAAAGAGGAAGTTGCTGCTTATAGGAACTCCTACAAGAAGAATA
TCTGTGTGGACATGCTGCGAGATGGTTATCATAAGTCCTTCACCGAGCTCTTCGCTCTGATGGAGCGGTG
GGATGCCCTGAGGGAGGCTGCGAGAGTCAGGTCCCTCTTCTGGCTGCAGAAGCCCCTGGAGGAGCAGCCT
GATAAACTGGATTACCTGTACCATTACCTGACCAGGGCTGAGGACGCTGAGAGGAAAGAATCCTTCGAAG
ATGTACATAATAACTTGTATGCTCTGGCCTGTTACTTCAATAATTCTGAAGACAAGTGGGTAAGGAACCA
CTTCTATGAACGATGTTTTAAGATTGCTCAGCTGATCAAAATTGACTGTGGGAAGAAAGAAGCCGAGGCA
CACATGCATATGGGTCTTCTCTACGAGGAAGATGGTCAGCTTCTGGAAGCTGCTGAGCATTATGAAGCAT
TCCATCAATTGACACAGGGGCGGATATGGAAGGATGAGACAGGCCGCTCTCTCAACTTGTTGGCCTGTGA
GAGTCTCCTGAGGACTTACAGATTACTCTCAGACAAAATGCTAGAAAATAAAGAATACAAACAGGCCATC
AAAATTCTAATAAAAGCTTCTGAAATAGCCAAAGAAGGAAGTGACAAAAAGATGGAAGCGGAAGCCTCTT
ACTACTTGGGCTTAGCACACTTAGCTGCTGAGGAATATGAAACAGCATTAACAGTCCTTGACACTTACTG
TAAAATCTCCACAGACCTGGATGATGATCTCAGTCTGGGGAGAGGCTATGAAGCCATAGCCAAGGTCCTG
CAGAGCCAAGGAGAGATGACAGAAGCAATTAAATACTTGAAAAAATTTGTGAAAATTGCAAGAAACAATT
TTCAAAGCCTAGATTTGGTGAGAGCAAGTACAATGCTTGGGGACATCTACAATGAAAAAGGATACTACAA
CAAAGCTTCTGAATGCTTTCAGCAAGCTTTTGACACAACAGTAGAGCTAATGAGCATGCCTCTGATGGAT
GAGACAAAAGTTCACTATGGAATAGCAAAAGCTCATCAGATGATGCTTACAGTGAACAACTATATAGAGT
CTGCAGATCTCACCAGCCTCAACTACCTGCTGTCATGGAAGGAGAGCAGAGGTAACATTGAACCTGATCC
AGTTACTGAAGAGTTTAGAGGATCCACAGTGGAAGCTGTATCTCAAAACTCAGAACGTTTGGAAGAACTC
AGTAGGTTTCCAGGTGATCAAAAAAATGAAACTTAA

Translation (501 aa):
MIPMFTVTLEDSGTLWKSLHSSSESEMTTLPPLPMTRPKLTALARQKLPCSSRKIPRSQLIKEKDDIDHY
LEVNFKGLSKEEVAAYRNSYKKNICVDMLRDGYHKSFTELFALMERWDALREAARVRSLFWLQKPLEEQP
DKLDYLYHYLTRAEDAERKESFEDVHNNLYALACYFNNSEDKWVRNHFYERCFKIAQLIKIDCGKKEAEA
HMHMGLLYEEDGQLLEAAEHYEAFHQLTQGRIWKDETGRSLNLLACESLLRTYRLLSDKMLENKEYKQAI
KILIKASEIAKEGSDKKMEAEASYYLGLAHLAAEEYETALTVLDTYCKISTDLDDDLSLGRGYEAIAKVL
QSQGEMTEAIKYLKKFVKIARNNFQSLDLVRASTMLGDIYNEKGYYNKASECFQQAFDTTVELMSMPLMD
ETKVHYGIAKAHQMMLTVNNYIESADLTSLNYLLSWKESRGNIEPDPVTEEFRGSTVEAVSQNSERLEEL
SRFPGDQKNET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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