NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS35876.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35876.1 Public Mus musculus 10 Cenpw 23 108 98 CCDS HistoryNCBI Gene:66311Re-query CCDS DB by CCDS ID:35876.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35876.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099985.5 ENSMUSP00000097565.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099985.5Link to Ensembl Protein Viewer:ENSMUSP00000097565.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000099985Re-query CCDS DB by Protein ID:ENSMUSP00000097565
Original member Current member NCBI NM_001109747.1 NP_001103217.1 Accepted alive Link to Nucleotide Sequence:NM_001109747.1Link to Protein Sequence:NP_001103217.1Re-query CCDS DB by Nucleotide ID:NM_001109747Re-query CCDS DB by Protein ID:NP_001103217Link to BLAST:NP_001103217.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103217.1 86 Q3URR0 86 100% 0 0

Chromosomal Locations for CCDS 35876.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 30197200 30197226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 30198466 30198579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 30200361 30200480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (261 nt):
ATGGCGCCCTCCACCACAGTCACTAGGCGGGTAAAGCGCAAGGCGCCCCGCGCCTTCCTCAAGCGCACCT
TAAAGCAGAAGAAGCCTCACCTAGGTCTGGGGAGGTGCTGCGACCTCCTGATCCATTTGAATTGCCTACT
TTTTATTCAGCGATTGGCAGAAGAGTCCAGGACAAATGCTTGTGAAAGTAAATCTAGAGTTATCAAAAAG
GATCATGTACTGGCTGCAGGAAAGGTAATTCTGAAGAAGAGCAGAGGTTAG

Translation (86 aa):
MAPSTTVTRRVKRKAPRAFLKRTLKQKKPHLGLGRCCDLLIHLNCLLFIQRLAEESRTNACESKSRVIKK
DHVLAAGKVILKKSRG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH